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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19781801	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35720
SBS	Chr10	19498161	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g36440
SBS	Chr11	10359615	T-C	HET	INTRON
SBS	Chr11	15036935	A-G	HET	INTERGENIC
SBS	Chr11	15783622	G-T	HOMO	INTERGENIC
SBS	Chr12	12870299	G-T	HET	INTERGENIC
SBS	Chr12	12932499	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22900
SBS	Chr3	30897859	C-T	HOMO	INTRON
SBS	Chr3	9231837	G-T	HET	INTERGENIC
SBS	Chr4	12861080	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22690
SBS	Chr4	23302893	C-T	HET	INTERGENIC
SBS	Chr5	11500342	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g19720
SBS	Chr6	20156686	G-T	HET	INTERGENIC
SBS	Chr6	20751204	A-G	HET	UTR_3_PRIME
SBS	Chr6	24554475	T-C	HET	INTERGENIC
SBS	Chr6	3717452	G-A	HOMO	INTERGENIC
SBS	Chr7	14388795	A-T	HET	INTERGENIC
SBS	Chr7	3773149	G-A	HOMO	INTERGENIC
SBS	Chr8	6696487	C-A	HET	INTERGENIC
SBS	Chr8	7275862	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12350
SBS	Chr9	17964728	C-T	HOMO	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2035550	2035620	70	LOC_Os10g04316
Deletion	Chr4	3803696	3803698	2
Deletion	Chr4	7071480	7071481	1
Deletion	Chr7	9602252	9602253	1
Deletion	Chr12	11819762	11819766	4
Deletion	Chr3	16310097	16310098	1
Deletion	Chr4	16513492	16513544	52
Deletion	Chr8	17547530	17547536	6
Deletion	Chr12	17755623	17755624	1
Deletion	Chr6	17768738	17768739	1
Deletion	Chr6	18302702	18302703	1
Deletion	Chr1	18490540	18490551	11
Deletion	Chr5	19696785	19696786	1
Deletion	Chr8	21755228	21755240	12
Deletion	Chr2	23230737	23230748	11
Deletion	Chr6	29613748	29613749	1
Deletion	Chr1	36981536	36981538	2	LOC_Os01g63750

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	10879317	10879318	2
Insertion	Chr5	22246987	22246989	3
Insertion	Chr5	22630015	22630024	10
Insertion	Chr5	337940	337941	2
Insertion	Chr7	12386059	12386059	1
Insertion	Chr7	9768454	9768454	1
Insertion	Chr8	20767372	20767372	1

No Inversion

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1640945	Chr6	4298291
Translocation	Chr4	9745996	Chr1	40083558
Translocation	Chr8	10279674	Chr1	2398876
Translocation	Chr11	10321343	Chr1	16146421
Translocation	Chr8	11164713	Chr7	5562454
Translocation	Chr5	11421900	Chr1	15460374
Translocation	Chr11	19930910	Chr8	19933685
Translocation	Chr11	22094146	Chr8	7405061
Translocation	Chr4	23938478	Chr3	5773004
Translocation	Chr12	24002699	Chr1	35517755
Translocation	Chr12	25414586	Chr4	16576318	LOC_Os12g41060

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