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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10837228	C-T	HOMO	INTERGENIC
SBS	Chr1	11096758	C-T	HET	INTRON
SBS	Chr1	14234904	C-T	HOMO	INTERGENIC
SBS	Chr1	26156269	T-C	HET	INTERGENIC
SBS	Chr1	26769226	G-A	HET	INTERGENIC
SBS	Chr10	9680393	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g19010
SBS	Chr10	9680394	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g19010
SBS	Chr11	8184966	C-T	HOMO	INTRON
SBS	Chr12	1627890	C-A	HET	INTERGENIC
SBS	Chr12	19804462	C-A	HET	INTERGENIC
SBS	Chr12	8264642	T-A	HET	INTERGENIC
SBS	Chr2	1760887	T-A	HET	SYNONYMOUS_CODING
SBS	Chr2	21658126	A-G	HOMO	INTERGENIC
SBS	Chr2	30614363	G-C	HET	INTRON
SBS	Chr2	3746309	G-A	HET	INTERGENIC
SBS	Chr3	1189726	C-G	HET	INTERGENIC
SBS	Chr3	11921010	T-A	HET	INTRON
SBS	Chr3	14511351	A-G	HET	INTERGENIC
SBS	Chr3	15172308	A-C	HET	INTERGENIC
SBS	Chr3	24739053	C-T	HET	INTERGENIC
SBS	Chr3	25467570	C-T	HET	INTRON
SBS	Chr3	28027433	G-C	HET	INTERGENIC
SBS	Chr3	34352986	G-A	HOMO	INTERGENIC
SBS	Chr3	9072259	C-T	HET	INTRON
SBS	Chr4	13190174	A-T	HET	INTRON
SBS	Chr4	4501295	A-T	HET	SYNONYMOUS_CODING
SBS	Chr4	8681443	T-A	HET	INTRON
SBS	Chr5	8144929	G-A	HOMO	STOP_GAINED	LOC_Os05g14440
SBS	Chr6	12672722	C-T	HOMO	INTERGENIC
SBS	Chr6	17652576	T-A	HOMO	INTERGENIC
SBS	Chr6	25302347	G-T	HET	INTERGENIC
SBS	Chr6	25302348	C-T	HET	INTERGENIC
SBS	Chr6	28604747	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr7	10233847	A-G	HOMO	INTERGENIC
SBS	Chr7	17726082	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30050
SBS	Chr7	17726083	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30050
SBS	Chr7	23081131	A-T	HET	INTERGENIC
SBS	Chr7	8437178	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	11298338	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g18940
SBS	Chr8	4094558	C-A	HET	INTERGENIC
SBS	Chr9	7847293	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	167540	167543	3
Deletion	Chr1	857410	857423	13
Deletion	Chr3	2347830	2347831	1
Deletion	Chr1	4208251	4208253	2
Deletion	Chr8	7348275	7348276	1
Deletion	Chr11	7731082	7731096	14
Deletion	Chr5	8164732	8164736	4
Deletion	Chr3	9069895	9069896	1
Deletion	Chr7	13313445	13313446	1
Deletion	Chr8	17044703	17044706	3
Deletion	Chr6	18655811	18655812	1	LOC_Os06g32080
Deletion	Chr4	21298816	21298822	6
Deletion	Chr8	22845090	22845091	1
Deletion	Chr3	22906322	22906368	46
Deletion	Chr4	26863945	26863946	1
Deletion	Chr11	28476996	28476997	1
Deletion	Chr6	29976001	29984000	7999	3
Deletion	Chr3	29988028	29988029	1
Deletion	Chr3	34340281	34340288	7
Deletion	Chr1	35894694	35894696	2

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25200717	25200722	6	LOC_Os01g43970
Insertion	Chr12	25289760	25289761	2
Insertion	Chr2	22745582	22745583	2
Insertion	Chr3	6607103	6607103	1
Insertion	Chr5	9790422	9790422	1
Insertion	Chr7	16239310	16239310	1
Insertion	Chr7	18898804	18898804	1
Insertion	Chr7	26511502	26511503	2
Insertion	Chr8	1226744	1226784	41
Insertion	Chr8	14632082	14632083	2
Insertion	Chr9	5959235	5959272	38

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4335492	4991691
Inversion	Chr2	4412766	4990504	LOC_Os02g08300
Inversion	Chr8	13369785	13388033
Inversion	Chr1	16066445	16133928
Inversion	Chr6	29947123	29975225
Inversion	Chr6	29947627	29984269

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2806238	Chr1	16065138	LOC_Os01g28690
Translocation	Chr8	2806241	Chr1	16066438
Translocation	Chr8	2806242	Chr7	4108637
Translocation	Chr7	4108810	Chr1	16066437
Translocation	Chr9	8941257	Chr1	30237136
Translocation	Chr6	9896752	Chr1	9951771
Translocation	Chr11	17928209	Chr3	21440143
Translocation	Chr6	25795463	Chr1	16142640
Translocation	Chr6	25795466	Chr1	16140213

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