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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14528424	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25630
SBS	Chr1	18041371	G-A	HET	INTERGENIC
SBS	Chr1	21978980	A-G	HET	INTRON
SBS	Chr1	29697153	G-A	HET	INTERGENIC
SBS	Chr10	12141649	C-T	HET	INTERGENIC
SBS	Chr10	12629403	T-C	HOMO	INTERGENIC
SBS	Chr10	8677784	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17250
SBS	Chr12	14492274	C-T	HET	INTERGENIC
SBS	Chr12	15592474	G-T	HET	INTERGENIC
SBS	Chr12	3380524	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06920
SBS	Chr2	11414973	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g19540
SBS	Chr2	13912128	C-A	HET	INTERGENIC
SBS	Chr2	18906055	C-T	HET	INTERGENIC
SBS	Chr2	20657583	T-C	HET	INTRON
SBS	Chr2	8699388	C-A	HET	INTERGENIC
SBS	Chr3	12687112	G-A	HET	INTERGENIC
SBS	Chr3	16930275	T-A	HET	INTERGENIC
SBS	Chr3	18272460	A-T	HET	INTERGENIC
SBS	Chr3	18272461	A-T	HET	INTERGENIC
SBS	Chr3	21986462	G-T	HET	INTERGENIC
SBS	Chr3	9814996	C-A	HOMO	INTRON
SBS	Chr3	9923786	C-T	HET	INTERGENIC
SBS	Chr3	9923787	C-T	HET	INTERGENIC
SBS	Chr4	13992862	C-T	HET	INTRON
SBS	Chr4	13992863	T-C	HET	INTRON
SBS	Chr4	14493375	C-G	HET	START_GAINED
SBS	Chr4	1719460	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03810
SBS	Chr4	29042498	C-G	HET	INTERGENIC
SBS	Chr4	5814020	C-A	HET	INTERGENIC
SBS	Chr5	25702242	C-T	HOMO	INTERGENIC
SBS	Chr6	14169440	C-T	HOMO	INTERGENIC
SBS	Chr6	17431306	G-A	HOMO	INTERGENIC
SBS	Chr6	20280083	T-G	HOMO	INTRON
SBS	Chr6	26185717	T-C	HET	INTRON
SBS	Chr7	15138848	C-T	HET	INTERGENIC
SBS	Chr8	24557202	A-G	HOMO	INTERGENIC
SBS	Chr8	6597855	G-T	HET	INTERGENIC
SBS	Chr9	1906312	G-A	HET	INTERGENIC
SBS	Chr9	6917366	T-A	HET	INTERGENIC

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	161254	161255	1
Deletion	Chr4	555489	555795	306
Deletion	Chr1	871584	871585	1
Deletion	Chr4	2542302	2542303	1
Deletion	Chr9	3086489	3086491	2
Deletion	Chr3	3298778	3298832	54	LOC_Os03g06550
Deletion	Chr11	3325245	3325249	4
Deletion	Chr3	3707272	3707273	1
Deletion	Chr4	3856199	3856206	7
Deletion	Chr6	4157142	4157143	1
Deletion	Chr6	4417735	4417811	76
Deletion	Chr9	4721079	4721080	1
Deletion	Chr5	5186492	5186513	21
Deletion	Chr10	5439118	5439124	6
Deletion	Chr10	6226775	6226792	17
Deletion	Chr3	7902517	7902518	1
Deletion	Chr6	8536355	8536356	1
Deletion	Chr12	9228999	9229000	1
Deletion	Chr7	11606100	11606105	5
Deletion	Chr3	13362876	13362877	1	LOC_Os03g23110
Deletion	Chr1	13562460	13562477	17
Deletion	Chr2	13594399	13594400	1
Deletion	Chr8	13863876	13863897	21
Deletion	Chr5	13999873	13999874	1	LOC_Os05g24200
Deletion	Chr1	14365158	14365160	2
Deletion	Chr5	14971406	14971407	1
Deletion	Chr1	16975172	16975173	1
Deletion	Chr3	17364983	17364986	3	LOC_Os03g30450
Deletion	Chr6	19300926	19300959	33
Deletion	Chr10	19591247	19591248	1
Deletion	Chr1	19946813	19946815	2
Deletion	Chr12	20493706	20493707	1
Deletion	Chr11	20696997	20697011	14
Deletion	Chr11	21052847	21052848	1
Deletion	Chr5	22319991	22319992	1
Deletion	Chr2	23438064	23438065	1
Deletion	Chr5	27330312	27330314	2
Deletion	Chr7	29240967	29240975	8

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16890676	16890676	1
Insertion	Chr1	23420341	23420341	1
Insertion	Chr11	11943459	11943459	1
Insertion	Chr11	14181250	14181250	1
Insertion	Chr11	20214949	20214949	1
Insertion	Chr11	23661838	23661838	1
Insertion	Chr12	16233976	16233976	1
Insertion	Chr12	24691399	24691399	1	LOC_Os12g39950
Insertion	Chr2	27283855	27283855	1
Insertion	Chr2	29157404	29157404	1
Insertion	Chr4	4431807	4431807	1
Insertion	Chr4	7408920	7408920	1
Insertion	Chr4	7415802	7415802	1	LOC_Os04g13340
Insertion	Chr5	12108729	12108729	1
Insertion	Chr6	22905916	22905917	2
Insertion	Chr7	10683389	10683389	1
Insertion	Chr7	12876803	12876803	1
Insertion	Chr7	14068283	14068283	1
Insertion	Chr7	16782460	16782460	1
Insertion	Chr9	4148690	4148690	1
Insertion	Chr9	4701650	4701650	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr2	20544678	20657868
Inversion	Chr2	20544687	20657882
Inversion	Chr3	33212039	33297852
Inversion	Chr3	33212041	33297852

Translocations: 16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	724907	Chr3	31273242
Translocation	Chr3	1302609	Chr2	15512942
Translocation	Chr4	2035519	Chr1	19122377	2
Translocation	Chr10	2607414	Chr6	15332605
Translocation	Chr8	5173800	Chr6	7992798
Translocation	Chr7	9330220	Chr4	3212535
Translocation	Chr3	9428792	Chr1	16513483
Translocation	Chr10	10163397	Chr1	12947268	LOC_Os10g20230
Translocation	Chr12	13141824	Chr7	10235940
Translocation	Chr9	13333418	Chr3	19876081
Translocation	Chr4	17228603	Chr3	26761847	LOC_Os03g47310
Translocation	Chr9	17271826	Chr4	4107273	LOC_Os04g07720
Translocation	Chr10	22723913	Chr4	11674384
Translocation	Chr12	22916487	Chr2	23806504
Translocation	Chr7	24512509	Chr1	10950209
Translocation	Chr11	27431204	Chr1	14360022

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