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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2160883	C-T	HOMO	INTERGENIC
SBS	Chr1	16821406	C-T	HOMO	INTERGENIC
SBS	Chr1	19069101	C-T	HET	INTERGENIC
SBS	Chr3	5324649	C-T	HET	UTR_5_PRIME
SBS	Chr3	12344364	C-A	HET	INTERGENIC
SBS	Chr3	26326463	C-G	HET	INTRON
SBS	Chr4	979266	A-T	HET	INTERGENIC
SBS	Chr4	3480403	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g06600
SBS	Chr4	5532590	G-A	HET	INTERGENIC
SBS	Chr4	7301071	G-T	HOMO	INTERGENIC
SBS	Chr4	17277359	G-T	HOMO	INTERGENIC
SBS	Chr4	17429330	T-G	HOMO	INTRON
SBS	Chr4	23925865	C-T	HET	INTERGENIC
SBS	Chr4	27227829	A-G	HET	INTERGENIC
SBS	Chr4	30468888	A-G	HET	INTRON
SBS	Chr5	4161502	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07730
SBS	Chr5	14188232	C-T	HOMO	INTERGENIC
SBS	Chr6	6394367	G-A	HOMO	INTERGENIC
SBS	Chr6	28486128	C-G	HOMO	INTERGENIC
SBS	Chr7	2378126	A-T	HET	INTERGENIC
SBS	Chr7	2378127	A-T	HET	INTERGENIC
SBS	Chr7	19660493	G-A	HOMO	INTRON
SBS	Chr7	29021001	T-A	HET	INTERGENIC
SBS	Chr7	29021002	G-A	HET	INTERGENIC
SBS	Chr8	8314448	A-C	HET	INTERGENIC
SBS	Chr8	19933281	T-A	HET	INTERGENIC
SBS	Chr8	24853587	T-G	HET	INTERGENIC
SBS	Chr9	22056638	T-C	HET	INTRON
SBS	Chr10	3607089	G-A	HET	INTERGENIC
SBS	Chr11	12965851	G-C	HET	INTRON
SBS	Chr11	20091630	C-A	HET	INTRON
SBS	Chr12	2682141	A-T	HET	INTERGENIC
SBS	Chr12	17052427	T-A	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2720105	2720108	3
Deletion	Chr2	2808931	2808932	1
Deletion	Chr8	3445402	3445431	29
Deletion	Chr2	4679216	4679217	1
Deletion	Chr2	4927911	4927913	2	LOC_Os02g09569
Deletion	Chr3	6480310	6480311	1
Deletion	Chr3	6527757	6527758	1
Deletion	Chr10	7107343	7107348	5	LOC_Os10g12740
Deletion	Chr5	7407791	7407799	8
Deletion	Chr5	7674228	7674242	14
Deletion	Chr8	8328047	8328058	11	LOC_Os08g13920
Deletion	Chr8	8649693	8649694	1
Deletion	Chr7	9730289	9730303	14	LOC_Os07g16590
Deletion	Chr2	10301344	10302882	1538	2
Deletion	Chr7	10379001	10564000	185000	27
Deletion	Chr2	11320497	11320498	1
Deletion	Chr3	11630960	11630973	13	LOC_Os03g20530
Deletion	Chr3	14203282	14203292	10
Deletion	Chr12	15059655	15059659	4
Deletion	Chr12	15804001	15966000	162000	26
Deletion	Chr7	16690500	16690509	9	LOC_Os07g28510
Deletion	Chr11	19039607	19039616	9
Deletion	Chr6	20794617	20794623	6
Deletion	Chr7	21206235	21206242	7
Deletion	Chr12	21526984	21526985	1	LOC_Os12g35395
Deletion	Chr9	22797335	22810198	12863	6
Deletion	Chr9	22812613	22813779	1166	LOC_Os09g39790
Deletion	Chr2	23905598	23905602	4
Deletion	Chr5	24899725	24899764	39
Deletion	Chr8	26028120	26028121	1
Deletion	Chr7	26285953	26285955	2
Deletion	Chr1	26791066	26791069	3	LOC_Os01g46940
Deletion	Chr4	26999151	26999158	7
Deletion	Chr4	27285748	27285803	55
Deletion	Chr3	27879587	27879594	7
Deletion	Chr4	30394797	30394800	3
Deletion	Chr3	33276672	33276674	2
Deletion	Chr1	40239284	40239285	1
Deletion	Chr1	42263783	42263786	3

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	3263114	3263117	4
Insertion	Chr8	16256240	16256243	4
Insertion	Chr1	8959275	8959280	6
Insertion	Chr11	17519776	17519778	3
Insertion	Chr4	23567991	23567992	2
Insertion	Chr1	23843460	23843460	1	LOC_Os01g42050
Insertion	Chr2	9193123	9193123	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7135477	8290316	LOC_Os09g12480

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2761235	Chr1	26316067	2
Translocation	Chr6	7209066	Chr5	11443231
Translocation	Chr10	8892685	Chr7	24229874	2
Translocation	Chr2	10302858	Chr1	18771745	2
Translocation	Chr7	10539166	Chr2	23019808	LOC_Os07g17810

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