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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10351070	T-A	HET	INTERGENIC
SBS	Chr1	24292437	C-T	HOMO	INTERGENIC
SBS	Chr1	39856638	G-A	HET	INTERGENIC
SBS	Chr2	7404922	A-T	HET	INTRON
SBS	Chr3	4504541	C-T	HET	INTERGENIC
SBS	Chr3	16236892	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g28204
SBS	Chr4	1599622	C-A	HET	INTRON
SBS	Chr4	7340169	C-T	HET	INTERGENIC
SBS	Chr4	7348488	A-T	HET	INTERGENIC
SBS	Chr4	8014561	G-A	HET	INTRON
SBS	Chr4	10162783	C-T	HET	INTRON
SBS	Chr4	13888214	G-A	HET	INTERGENIC
SBS	Chr4	17030176	G-A	HET	INTERGENIC
SBS	Chr4	21680455	A-T	HET	INTERGENIC
SBS	Chr4	21699147	G-A	HET	INTERGENIC
SBS	Chr4	27441010	G-T	HET	INTERGENIC
SBS	Chr5	20860796	C-T	HOMO	INTERGENIC
SBS	Chr6	416678	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	5719794	G-A	HOMO	INTERGENIC
SBS	Chr8	8359394	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g13950
SBS	Chr9	3583721	G-A	HET	INTRON
SBS	Chr9	5493260	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10080
SBS	Chr9	5493261	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10080
SBS	Chr9	21972228	T-C	HOMO	INTERGENIC
SBS	Chr10	4378354	A-G	HET	INTERGENIC
SBS	Chr11	10965949	C-T	HET	INTERGENIC
SBS	Chr11	12952779	G-A	HET	INTRON
SBS	Chr11	14100823	T-C	HOMO	INTERGENIC
SBS	Chr11	20783228	T-A	HOMO	INTERGENIC
SBS	Chr11	27298574	G-A	HOMO	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1026763	1026766	3
Deletion	Chr4	2408594	2408598	4
Deletion	Chr5	5057599	5057600	1
Deletion	Chr6	5132678	5132679	1
Deletion	Chr8	5200707	5200713	6
Deletion	Chr12	6021473	6021476	3	LOC_Os12g11180
Deletion	Chr12	7456734	7456735	1
Deletion	Chr9	8253070	8253071	1
Deletion	Chr2	10359448	10359449	1
Deletion	Chr8	15533155	15533156	1	2
Deletion	Chr12	15579584	15579588	4
Deletion	Chr3	17308988	17308989	1
Deletion	Chr10	17769182	17769188	6
Deletion	Chr2	18325198	18325220	22
Deletion	Chr6	18628710	18628711	1
Deletion	Chr10	18932212	18932216	4
Deletion	Chr10	21082553	21082554	1	LOC_Os10g39480
Deletion	Chr6	21695000	21695001	1
Deletion	Chr3	22923257	22923258	1
Deletion	Chr5	24022300	24022317	17
Deletion	Chr11	24779950	24779952	2
Deletion	Chr2	25079324	25079338	14	LOC_Os02g41720
Deletion	Chr1	27234664	27234666	2
Deletion	Chr3	29737893	29737894	1	LOC_Os03g51850
Deletion	Chr3	31101484	31101498	14
Deletion	Chr2	33468691	33468692	1
Deletion	Chr2	34764454	34764461	7
Deletion	Chr1	39580856	39580858	2	LOC_Os01g68080

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13045379	13045379	1
Insertion	Chr1	28808960	28808960	1
Insertion	Chr2	3941157	3941157	1
Insertion	Chr4	33034902	33034902	1	LOC_Os04g55530
Insertion	Chr5	11965623	11965623	1
Insertion	Chr6	18875118	18875118	1
Insertion	Chr7	27956123	27956123	1
Insertion	Chr8	15533155	15533156	2	2
Insertion	Chr9	319609	319610	2
Insertion	Chr10	8452042	8452042	1
Insertion	Chr12	15291864	15291864	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	11718576	12295781	LOC_Os07g21980

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1745445	Chr2	11359073	LOC_Os07g04110
Translocation	Chr4	3615307	Chr1	21959763
Translocation	Chr6	4240065	Chr1	38042937
Translocation	Chr10	5113810	Chr4	2989350
Translocation	Chr11	8879590	Chr5	4928632
Translocation	Chr11	11746880	Chr2	27012889
Translocation	Chr11	11755288	Chr2	18688046
Translocation	Chr11	17782514	Chr6	14001920
Translocation	Chr12	19092048	Chr1	24366466
Translocation	Chr7	19727682	Chr5	1618641
Translocation	Chr11	19842339	Chr3	29848934
Translocation	Chr11	25992795	Chr6	9594726
Translocation	Chr5	28724663	Chr3	9391706

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