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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1973401	G-A	HET	INTERGENIC
SBS	Chr1	27964758	A-G	HET	INTRON
SBS	Chr11	17397757	C-T	HET	INTERGENIC
SBS	Chr11	25665524	G-A	HOMO	INTERGENIC
SBS	Chr11	8910055	A-T	HET	INTERGENIC
SBS	Chr12	15113478	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g26010
SBS	Chr12	15641842	C-T	HET	INTERGENIC
SBS	Chr12	17450627	C-T	HET	INTERGENIC
SBS	Chr12	18443643	A-T	HET	INTERGENIC
SBS	Chr12	21004180	A-C	HET	INTERGENIC
SBS	Chr12	21230297	C-T	HET	UTR_3_PRIME
SBS	Chr12	2193001	A-G	HET	INTERGENIC
SBS	Chr3	10428433	C-T	HET	INTERGENIC
SBS	Chr3	5013957	T-A	HET	INTERGENIC
SBS	Chr3	6617359	G-C	HET	INTERGENIC
SBS	Chr4	13602289	C-T	HOMO	INTRON
SBS	Chr4	23684107	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39740
SBS	Chr4	2895996	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g05670
SBS	Chr4	7632454	C-A	HET	INTERGENIC
SBS	Chr4	8628198	G-A	HET	INTERGENIC
SBS	Chr5	15212912	C-T	HOMO	INTERGENIC
SBS	Chr5	18653489	G-A	HET	INTERGENIC
SBS	Chr5	3198857	C-T	HOMO	INTERGENIC
SBS	Chr6	10758390	G-T	HET	SYNONYMOUS_CODING
SBS	Chr6	15971973	T-C	HET	INTRON
SBS	Chr6	23205139	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	23669116	A-T	HET	INTERGENIC
SBS	Chr6	3665873	A-T	HET	INTERGENIC
SBS	Chr7	13614313	C-T	HET	INTRON
SBS	Chr8	12969605	C-T	HET	INTERGENIC
SBS	Chr8	13415155	G-A	HOMO	INTERGENIC
SBS	Chr8	1508415	A-C	HET	INTERGENIC
SBS	Chr8	17027604	G-A	HOMO	INTRON
SBS	Chr8	19831898	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g31980
SBS	Chr8	2677405	C-A	HET	INTERGENIC
SBS	Chr9	12942446	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	18019754	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29630
SBS	Chr9	18019755	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29630
SBS	Chr9	21007016	C-T	HET	SPLICE_SITE_REGION
SBS	Chr9	21775034	T-A	HET	INTRON
SBS	Chr9	993439	G-A	HOMO	UTR_3_PRIME

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	329531	329539	8
Deletion	Chr1	4595727	4595751	24
Deletion	Chr10	5409479	5409481	2
Deletion	Chr3	6275583	6275584	1
Deletion	Chr5	6520883	6520884	1
Deletion	Chr1	7397180	7397184	4
Deletion	Chr5	8336541	8336542	1
Deletion	Chr5	9957491	9957638	147
Deletion	Chr6	12216078	12216121	43
Deletion	Chr9	12750904	12750905	1
Deletion	Chr9	13164593	13164597	4	LOC_Os09g21740
Deletion	Chr7	14258363	14258417	54
Deletion	Chr10	15952374	15952375	1
Deletion	Chr3	16659193	16659194	1
Deletion	Chr7	16843999	16844003	4
Deletion	Chr10	17836739	17836740	1
Deletion	Chr12	19773569	19773586	17
Deletion	Chr1	23411203	23411205	2
Deletion	Chr11	25781635	25781636	1
Deletion	Chr3	30464694	30464696	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	16277081	16277100	20
Insertion	Chr4	26774605	26774606	2
Insertion	Chr4	3502556	3502556	1
Insertion	Chr5	666158	666199	42
Insertion	Chr7	25322297	25322299	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9366514	9809945	LOC_Os01g16500
Inversion	Chr1	9366520	9809956	LOC_Os01g16500
Inversion	Chr1	19673144	19711104	LOC_Os01g35560
Inversion	Chr1	24234190	24330782
Inversion	Chr1	24234199	24330873

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3566878	Chr2	32335482
Translocation	Chr9	4143463	Chr1	19711105
Translocation	Chr9	4146250	Chr1	20823537	LOC_Os01g37300
Translocation	Chr8	6761571	Chr7	9591943
Translocation	Chr9	11617926	Chr4	13242524
Translocation	Chr12	12144255	Chr5	5504612
Translocation	Chr8	14880124	Chr3	23141742
Translocation	Chr11	18148913	Chr6	6320284

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