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Mutant Information

Mutant Name	FN3184-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3184-S Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21523240	G-T	HET	INTERGENIC
SBS	Chr1	24287560	C-T	HET	INTERGENIC
SBS	Chr1	38815687	G-T	HOMO	INTERGENIC
SBS	Chr10	5632133	T-C	HOMO	INTERGENIC
SBS	Chr10	5827314	C-G	HOMO	INTRON
SBS	Chr11	19194191	A-G	HOMO	INTERGENIC
SBS	Chr11	5800771	G-A	HOMO	INTRON
SBS	Chr11	5800772	A-C	HOMO	INTRON
SBS	Chr11	7649508	T-G	HOMO	UTR_3_PRIME
SBS	Chr12	13484457	C-T	HOMO	INTERGENIC
SBS	Chr12	16521670	G-A	HET	INTERGENIC
SBS	Chr12	17081738	C-T	HET	INTRON
SBS	Chr12	18739458	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	26848488	A-T	HET	INTERGENIC
SBS	Chr2	10040251	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g17450
SBS	Chr2	14441144	G-T	HET	INTERGENIC
SBS	Chr2	30621811	T-C	HET	INTERGENIC
SBS	Chr2	31064371	C-A	HET	UTR_5_PRIME
SBS	Chr2	33473734	A-T	HET	INTRON
SBS	Chr3	10584614	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g18890
SBS	Chr3	35895302	A-G	HOMO	INTERGENIC
SBS	Chr4	29301085	C-G	HOMO	INTERGENIC
SBS	Chr4	5452463	C-A	HOMO	STOP_GAINED	LOC_Os04g10100
SBS	Chr4	5452464	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	5452465	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g10100
SBS	Chr4	5938724	A-G	HOMO	INTERGENIC
SBS	Chr4	8963848	G-A	HET	INTERGENIC
SBS	Chr5	5485524	C-T	HET	INTERGENIC
SBS	Chr5	7088705	C-T	HET	INTERGENIC
SBS	Chr5	7898925	G-A	HOMO	INTERGENIC
SBS	Chr5	7898926	C-A	HOMO	INTERGENIC
SBS	Chr5	9228110	C-T	HOMO	INTRON
SBS	Chr5	9576344	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g16810
SBS	Chr6	19534847	T-G	HET	INTRON
SBS	Chr7	9647207	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16470
SBS	Chr8	21087357	C-A	HOMO	INTERGENIC
SBS	Chr8	25773353	C-T	HET	INTERGENIC
SBS	Chr8	25854258	G-A	HET	INTRON
SBS	Chr9	14332168	A-G	HOMO	UTR_3_PRIME
SBS	Chr9	16464619	G-A	HOMO	INTRON
SBS	Chr9	16464624	G-A	HOMO	INTRON
SBS	Chr9	8458486	A-T	HOMO	INTERGENIC
SBS	Chr9	8530264	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g14430

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1258583	1258584	1
Deletion	Chr3	1592530	1592531	1
Deletion	Chr8	1984939	1984960	21
Deletion	Chr11	2696126	2696127	1
Deletion	Chr4	2872949	2873059	110
Deletion	Chr10	3303955	3303956	1	LOC_Os10g06430
Deletion	Chr5	3921096	3921099	3
Deletion	Chr10	7566553	7566556	3
Deletion	Chr10	7665778	7665779	1	LOC_Os10g14120
Deletion	Chr12	8103151	8103153	2	LOC_Os12g14250
Deletion	Chr7	8441495	8441496	1
Deletion	Chr6	8536018	8536019	1
Deletion	Chr10	8584699	8584700	1
Deletion	Chr8	11002301	11002318	17
Deletion	Chr7	11613061	11613103	42
Deletion	Chr3	12080085	12080089	4
Deletion	Chr11	12111744	12111745	1
Deletion	Chr9	12770001	12785000	14999	3
Deletion	Chr9	12793001	12815000	21999	2
Deletion	Chr6	13770352	13770354	2
Deletion	Chr5	14281370	14281371	1
Deletion	Chr8	15571103	15571115	12
Deletion	Chr1	16317247	16317263	16
Deletion	Chr11	16553159	16553160	1
Deletion	Chr9	16684001	16871000	186999	24
Deletion	Chr8	16934911	16934912	1
Deletion	Chr6	17068259	17068269	10
Deletion	Chr9	17665515	17665517	2
Deletion	Chr3	18039688	18039689	1	LOC_Os03g31594
Deletion	Chr11	22525106	22525107	1
Deletion	Chr1	22549029	22549030	1
Deletion	Chr2	24448832	24448833	1
Deletion	Chr11	26602329	26602330	1
Deletion	Chr4	27952916	27952919	3
Deletion	Chr7	28838757	28838758	1
Deletion	Chr4	32798209	32798220	11
Deletion	Chr1	33576628	33576629	1
Deletion	Chr3	35617386	35617393	7
Deletion	Chr1	37466141	37466142	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	22565374	22565374	1
Insertion	Chr10	11452752	11452752	1
Insertion	Chr12	26545873	26545874	2
Insertion	Chr2	26721325	26721325	1
Insertion	Chr5	1634633	1634633	1
Insertion	Chr9	22026122	22026122	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2254063	2842284	LOC_Os12g05120
Inversion	Chr12	2254070	2842289	LOC_Os12g05120

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	2487538	Chr1	28210986
Translocation	Chr8	4667316	Chr5	21188254
Translocation	Chr11	5341180	Chr6	8931797
Translocation	Chr11	6190465	Chr3	27458651	2
Translocation	Chr4	6748884	Chr2	20318706
Translocation	Chr12	12437261	Chr11	19693515
Translocation	Chr7	13781043	Chr3	17297489
Translocation	Chr3	14584527	Chr2	24231589
Translocation	Chr8	15934947	Chr7	6243110
Translocation	Chr7	18371983	Chr1	17686323
Translocation	Chr11	19200649	Chr9	4333976
Translocation	Chr6	20502515	Chr1	11599807	LOC_Os06g35170
Translocation	Chr6	27455075	Chr1	20917541

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