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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20189183	T-C	HET	INTERGENIC
SBS	Chr1	30432103	G-A	HOMO	INTERGENIC
SBS	Chr1	33697359	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g58300
SBS	Chr11	11862264	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g20480
SBS	Chr11	2642181	C-T	HET	INTRON
SBS	Chr11	687122	C-T	HOMO	INTRON
SBS	Chr12	22431851	G-T	HET	INTERGENIC
SBS	Chr2	28759565	A-T	HET	INTERGENIC
SBS	Chr2	593347	C-T	HOMO	INTERGENIC
SBS	Chr2	7414061	G-A	HET	INTERGENIC
SBS	Chr3	10160033	C-T	HET	INTERGENIC
SBS	Chr3	30735457	A-T	HET	INTERGENIC
SBS	Chr3	5128273	A-G	HET	INTERGENIC
SBS	Chr3	957748	G-T	HET	UTR_3_PRIME
SBS	Chr4	13564858	G-A	HET	INTERGENIC
SBS	Chr4	8866861	G-A	HET	INTERGENIC
SBS	Chr5	13296389	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g23290
SBS	Chr5	24538902	G-T	HET	INTRON
SBS	Chr5	818597	A-T	HOMO	INTERGENIC
SBS	Chr6	14208625	G-A	HET	INTERGENIC
SBS	Chr6	25334967	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42200
SBS	Chr6	7085563	C-A	HET	INTRON
SBS	Chr6	98089	T-A	HET	INTRON
SBS	Chr7	27218674	T-C	HET	INTRON
SBS	Chr8	14219760	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23480
SBS	Chr9	15865264	G-A	HET	INTERGENIC
SBS	Chr9	18368652	G-A	HET	INTERGENIC
SBS	Chr9	6173126	C-T	HET	UTR_5_PRIME
SBS	Chr9	6875466	C-T	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3369041	3369047	6
Deletion	Chr2	3950069	3950075	6
Deletion	Chr7	5336464	5336465	1
Deletion	Chr2	6142977	6142979	2
Deletion	Chr9	8036278	8036304	26
Deletion	Chr1	9526192	9526193	1
Deletion	Chr9	10653692	10653730	38	LOC_Os09g17410
Deletion	Chr11	12108413	12108414	1
Deletion	Chr1	14702001	14741000	38999	9
Deletion	Chr3	15873001	15880000	6999	2
Deletion	Chr3	16059602	16059603	1
Deletion	Chr2	16518661	16518684	23
Deletion	Chr3	16753136	16753141	5
Deletion	Chr4	17789704	17789728	24
Deletion	Chr2	18715630	18715631	1
Deletion	Chr3	19362931	19362937	6
Deletion	Chr5	19511088	19511089	1
Deletion	Chr9	20223833	20223840	7
Deletion	Chr7	21509741	21509749	8
Deletion	Chr1	21619168	21619169	1
Deletion	Chr5	21998001	22127000	128999	20
Deletion	Chr3	25317181	25317187	6
Deletion	Chr1	26815761	26815773	12
Deletion	Chr1	27333156	27333171	15
Deletion	Chr11	27818912	27818916	4
Deletion	Chr4	28412923	28412934	11
Deletion	Chr6	30046209	30046215	6
Deletion	Chr3	36352052	36352054	2	LOC_Os03g64320

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	3311793	3311793	1
Insertion	Chr10	4000832	4000832	1
Insertion	Chr11	25113043	25113050	8
Insertion	Chr5	15597443	15597443	1
Insertion	Chr6	10303135	10303135	1
Insertion	Chr9	16146205	16146214	10

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6602449	6911011	LOC_Os11g11890

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	531791	Chr1	34497365
Translocation	Chr11	6128307	Chr3	28273912
Translocation	Chr8	8734082	Chr1	19943859
Translocation	Chr12	10628773	Chr6	17675288
Translocation	Chr11	10867246	Chr2	24386435
Translocation	Chr5	20698566	Chr3	35705575
Translocation	Chr12	23238910	Chr6	6426501	LOC_Os12g37830
Translocation	Chr11	24439231	Chr5	21302443

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