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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36938070	G-T	HET	INTRON
SBS	Chr1	37356987	T-C	HET	INTERGENIC
SBS	Chr1	39992773	C-T	HET	INTRON
SBS	Chr1	4097612	G-A	HET	INTERGENIC
SBS	Chr1	41159833	T-C	HET	START_GAINED
SBS	Chr1	8924753	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g15840
SBS	Chr10	14035188	T-C	HET	INTERGENIC
SBS	Chr10	22918128	T-C	HET	INTERGENIC
SBS	Chr10	3219097	C-A	HET	INTERGENIC
SBS	Chr11	18566870	G-T	HOMO	INTRON
SBS	Chr12	12629589	A-G	HOMO	INTERGENIC
SBS	Chr12	16034199	A-C	HET	INTERGENIC
SBS	Chr2	15144643	G-A	HET	INTERGENIC
SBS	Chr2	15144646	C-A	HET	INTERGENIC
SBS	Chr3	13059010	A-G	HET	INTRON
SBS	Chr3	20394766	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36760
SBS	Chr3	23123639	G-A	HOMO	INTERGENIC
SBS	Chr3	26291189	G-A	HOMO	INTRON
SBS	Chr3	28043010	G-A	HOMO	INTERGENIC
SBS	Chr3	29218789	C-A	HET	INTERGENIC
SBS	Chr3	34395775	G-T	HET	INTERGENIC
SBS	Chr4	18792746	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g31420
SBS	Chr4	19595363	T-C	HOMO	UTR_3_PRIME
SBS	Chr4	28646618	A-T	HOMO	INTRON
SBS	Chr4	32468023	C-T	HET	INTERGENIC
SBS	Chr4	34215469	G-A	HET	INTERGENIC
SBS	Chr5	22502562	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	24990364	T-G	HET	INTERGENIC
SBS	Chr5	5719999	A-T	HET	INTRON
SBS	Chr5	9965887	A-G	HOMO	INTRON
SBS	Chr6	15246048	C-T	HET	INTERGENIC
SBS	Chr6	5443829	A-T	HET	INTERGENIC
SBS	Chr7	29575198	C-T	HET	INTERGENIC
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr8	26742083	T-A	HET	INTRON
SBS	Chr8	27337795	T-G	HET	INTERGENIC
SBS	Chr8	5393980	A-G	HET	INTERGENIC
SBS	Chr8	9469715	G-T	HET	STOP_GAINED	LOC_Os08g15570
SBS	Chr9	10455630	T-C	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	5198917	5198920	3	LOC_Os06g10160
Deletion	Chr6	5718500	5718502	2
Deletion	Chr2	7481001	7668000	186999	21
Deletion	Chr8	11002301	11002318	17
Deletion	Chr2	11120345	11120346	1
Deletion	Chr9	11462680	11462697	17
Deletion	Chr6	12194643	12194644	1
Deletion	Chr3	13134759	13134764	5	LOC_Os03g22740
Deletion	Chr4	13347826	13347831	5	LOC_Os04g23360
Deletion	Chr8	15064310	15064349	39	LOC_Os08g24880
Deletion	Chr4	16088435	16088442	7	LOC_Os04g27220
Deletion	Chr2	16492894	16492897	3	LOC_Os02g27850
Deletion	Chr6	17097676	17097679	3
Deletion	Chr6	17432717	17432719	2
Deletion	Chr1	18022928	18022939	11
Deletion	Chr7	18603541	18603542	1
Deletion	Chr6	18629143	18629144	1
Deletion	Chr4	24832135	24832137	2
Deletion	Chr3	26958938	26958945	7
Deletion	Chr7	28647365	28647393	28
Deletion	Chr2	31401056	31401058	2
Deletion	Chr3	32987936	32987938	2	LOC_Os03g57920
Deletion	Chr1	34224021	34224023	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	32946444	32946444	1
Insertion	Chr12	8076483	8076555	73	LOC_Os12g14220
Insertion	Chr2	26485506	26485520	15
Insertion	Chr3	11157155	11157186	32
Insertion	Chr4	6856181	6856181	1
Insertion	Chr6	19777890	19777890	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13037299	13061195
Inversion	Chr3	13039678	13061215	LOC_Os03g22620

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5449824	Chr3	24338834	LOC_Os06g10560
Translocation	Chr6	5451362	Chr3	24338829	LOC_Os06g10560
Translocation	Chr12	8640153	Chr4	2526652
Translocation	Chr8	13361582	Chr3	20015247
Translocation	Chr8	13361586	Chr3	20013315
Translocation	Chr11	27858617	Chr1	3226163	LOC_Os01g06790

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