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Mutant Information

Mutant NameFN320-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN320-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Low (Between 25% and 75%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 27
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr137589768T-GHOMOUTR_3_PRIME
SBSChr17097976T-CHETINTERGENIC
SBSChr1010625100C-THETINTRON
SBSChr1015725846G-AHETINTERGENIC
SBSChr105271242G-AHETINTERGENIC
SBSChr105887050A-CHETSYNONYMOUS_CODING
SBSChr1124665085G-AHETINTERGENIC
SBSChr1217610819C-AHETINTERGENIC
SBSChr221819142T-CHETINTERGENIC
SBSChr29246775C-THETINTERGENIC
SBSChr320007485C-AHETINTERGENIC
SBSChr35148692A-THETINTERGENIC
SBSChr38148549C-THOMOINTERGENIC
SBSChr410049301C-THETINTERGENIC
SBSChr411148033C-THOMOINTERGENIC
SBSChr413498450G-AHETINTERGENIC
SBSChr4604210T-CHOMONON_SYNONYMOUS_CODINGLOC_Os04g01970
SBSChr51622338C-THETSTOP_GAINEDLOC_Os05g03710
SBSChr517052730A-GHETINTRON
SBSChr522629338C-THETINTERGENIC
SBSChr528302644A-GHETINTERGENIC
SBSChr55207262T-GHETINTRON
SBSChr624049628T-AHETINTERGENIC
SBSChr628490727T-CHOMOINTERGENIC
SBSChr74436880G-AHETINTRON
SBSChr7842601C-AHETINTRON
SBSChr97275568T-AHETINTRON

Deletions: 25
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr89360929360931LOC_Os08g02360
DeletionChr7365158036515888
DeletionChr4479815347981629
DeletionChr11710348771034881
DeletionChr11815991081599199
DeletionChr1296821829682284102
DeletionChr110640528106405291
DeletionChr610721422107214231
DeletionChr311126696111266971
DeletionChr1012396938123969391LOC_Os10g24200
DeletionChr612855027128550336
DeletionChr514604910146049155LOC_Os05g25194
DeletionChr5150533941505340612LOC_Os05g25860
DeletionChr12153577801535779212LOC_Os12g26310
DeletionChr3171348951713490611LOC_Os03g30030
DeletionChr3179342491793426011
DeletionChr318751025187510261LOC_Os03g32749
DeletionChr318788596187885993
DeletionChr721434739214347478LOC_Os07g35790
DeletionChr423413358234133591
DeletionChr323413981234139832
DeletionChr127353106273531093
DeletionChr529570153295701541
DeletionChr3304606043046061915
DeletionChr1361212293612124314

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr11874660287466021
InsertionChr621310741213107422
InsertionChr922500019225000191

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr22111892121818126LOC_Os02g35160
InversionChr22111895621818139LOC_Os02g35160

Translocations: 2
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr912189006Chr818255700LOC_Os08g29720
TranslocationChr912189625Chr818255734LOC_Os08g29720