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Mutant Information |
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Mutant Name | FN320-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN320-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 27
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 37589768 | T-G | HOMO | UTR_3_PRIME | |
SBS | Chr1 | 7097976 | T-C | HET | INTERGENIC | |
SBS | Chr10 | 10625100 | C-T | HET | INTRON | |
SBS | Chr10 | 15725846 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 5271242 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 5887050 | A-C | HET | SYNONYMOUS_CODING | |
SBS | Chr11 | 24665085 | G-A | HET | INTERGENIC | |
SBS | Chr12 | 17610819 | C-A | HET | INTERGENIC | |
SBS | Chr2 | 21819142 | T-C | HET | INTERGENIC | |
SBS | Chr2 | 9246775 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 20007485 | C-A | HET | INTERGENIC | |
SBS | Chr3 | 5148692 | A-T | HET | INTERGENIC | |
SBS | Chr3 | 8148549 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 10049301 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 11148033 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 13498450 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 604210 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g01970 |
SBS | Chr5 | 1622338 | C-T | HET | STOP_GAINED | LOC_Os05g03710 |
SBS | Chr5 | 17052730 | A-G | HET | INTRON | |
SBS | Chr5 | 22629338 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 28302644 | A-G | HET | INTERGENIC | |
SBS | Chr5 | 5207262 | T-G | HET | INTRON | |
SBS | Chr6 | 24049628 | T-A | HET | INTERGENIC | |
SBS | Chr6 | 28490727 | T-C | HOMO | INTERGENIC | |
SBS | Chr7 | 4436880 | G-A | HET | INTRON | |
SBS | Chr7 | 842601 | C-A | HET | INTRON | |
SBS | Chr9 | 7275568 | T-A | HET | INTRON |
Deletions: 25
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 936092 | 936093 | 1 | LOC_Os08g02360 |
Deletion | Chr7 | 3651580 | 3651588 | 8 | |
Deletion | Chr4 | 4798153 | 4798162 | 9 | |
Deletion | Chr11 | 7103487 | 7103488 | 1 | |
Deletion | Chr11 | 8159910 | 8159919 | 9 | |
Deletion | Chr12 | 9682182 | 9682284 | 102 | |
Deletion | Chr1 | 10640528 | 10640529 | 1 | |
Deletion | Chr6 | 10721422 | 10721423 | 1 | |
Deletion | Chr3 | 11126696 | 11126697 | 1 | |
Deletion | Chr10 | 12396938 | 12396939 | 1 | LOC_Os10g24200 |
Deletion | Chr6 | 12855027 | 12855033 | 6 | |
Deletion | Chr5 | 14604910 | 14604915 | 5 | LOC_Os05g25194 |
Deletion | Chr5 | 15053394 | 15053406 | 12 | LOC_Os05g25860 |
Deletion | Chr12 | 15357780 | 15357792 | 12 | LOC_Os12g26310 |
Deletion | Chr3 | 17134895 | 17134906 | 11 | LOC_Os03g30030 |
Deletion | Chr3 | 17934249 | 17934260 | 11 | |
Deletion | Chr3 | 18751025 | 18751026 | 1 | LOC_Os03g32749 |
Deletion | Chr3 | 18788596 | 18788599 | 3 | |
Deletion | Chr7 | 21434739 | 21434747 | 8 | LOC_Os07g35790 |
Deletion | Chr4 | 23413358 | 23413359 | 1 | |
Deletion | Chr3 | 23413981 | 23413983 | 2 | |
Deletion | Chr1 | 27353106 | 27353109 | 3 | |
Deletion | Chr5 | 29570153 | 29570154 | 1 | |
Deletion | Chr3 | 30460604 | 30460619 | 15 | |
Deletion | Chr1 | 36121229 | 36121243 | 14 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 8746602 | 8746602 | 1 | |
Insertion | Chr6 | 21310741 | 21310742 | 2 | |
Insertion | Chr9 | 22500019 | 22500019 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr2 | 21118921 | 21818126 | LOC_Os02g35160 |
Inversion | Chr2 | 21118956 | 21818139 | LOC_Os02g35160 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 12189006 | Chr8 | 18255700 | LOC_Os08g29720 |
Translocation | Chr9 | 12189625 | Chr8 | 18255734 | LOC_Os08g29720 |