Search Nipponbare

Mutant Information

Mutant Name	FN3200-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3200-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 53

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10524071	A-G	HET	INTERGENIC
SBS	Chr1	13714811	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	14938796	C-A	HET	INTERGENIC
SBS	Chr1	15826570	A-T	HET	INTRON
SBS	Chr1	3578479	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g07500
SBS	Chr1	3578480	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g07500
SBS	Chr1	37053968	C-T	HOMO	INTERGENIC
SBS	Chr1	6178812	C-A	HOMO	INTERGENIC
SBS	Chr10	12357783	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	15808726	G-T	HOMO	INTRON
SBS	Chr10	19677812	G-A	HOMO	INTRON
SBS	Chr10	19718817	C-T	HET	INTRON
SBS	Chr10	4629111	G-A	HET	INTERGENIC
SBS	Chr10	7840793	T-G	HET	INTERGENIC
SBS	Chr12	14430621	T-A	HET	INTERGENIC
SBS	Chr12	2494023	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g05450
SBS	Chr12	25155050	T-C	HOMO	INTERGENIC
SBS	Chr2	10450231	A-G	HET	INTRON
SBS	Chr2	14988685	T-C	HET	INTERGENIC
SBS	Chr2	1984355	G-A	HET	INTERGENIC
SBS	Chr2	27636509	A-C	HOMO	INTERGENIC
SBS	Chr2	33879678	C-T	HET	INTRON
SBS	Chr2	35510836	T-C	HET	UTR_3_PRIME
SBS	Chr3	10700603	C-T	HET	INTRON
SBS	Chr3	12834142	A-C	HET	INTERGENIC
SBS	Chr3	12834143	A-G	HET	INTERGENIC
SBS	Chr3	34834805	C-T	HET	INTERGENIC
SBS	Chr4	10292766	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g18610
SBS	Chr4	13767816	C-A	HET	INTERGENIC
SBS	Chr4	15452063	C-G	HET	INTERGENIC
SBS	Chr4	33184996	C-T	HET	INTERGENIC
SBS	Chr4	35102347	T-A	HET	INTERGENIC
SBS	Chr4	4574077	A-C	HET	INTERGENIC
SBS	Chr4	4704221	A-T	HET	INTERGENIC
SBS	Chr4	8397736	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14930
SBS	Chr5	16520963	C-A	HET	INTERGENIC
SBS	Chr5	18183998	A-G	HET	UTR_3_PRIME
SBS	Chr5	18260323	T-C	HET	INTRON
SBS	Chr5	21578432	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g36940
SBS	Chr5	2351320	T-A	HET	INTERGENIC
SBS	Chr6	16716694	G-A	HET	STOP_GAINED	LOC_Os06g29280
SBS	Chr6	23883332	G-A	HET	INTERGENIC
SBS	Chr6	28367322	A-G	HET	INTRON
SBS	Chr6	3443963	C-T	HET	INTERGENIC
SBS	Chr7	23373804	A-C	HOMO	UTR_5_PRIME
SBS	Chr8	12782263	T-A	HOMO	INTRON
SBS	Chr8	21310522	G-T	HOMO	INTERGENIC
SBS	Chr8	22120046	G-C	HET	INTERGENIC
SBS	Chr8	4140548	C-A	HET	INTRON
SBS	Chr9	19954659	G-T	HOMO	INTERGENIC
SBS	Chr9	5346406	C-T	HET	INTERGENIC
SBS	Chr9	5406516	G-T	HET	INTERGENIC
SBS	Chr9	5406517	A-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1272419	1272423	4
Deletion	Chr3	4256113	4256116	3
Deletion	Chr2	4704590	4704591	1
Deletion	Chr9	5725664	5725665	1	LOC_Os09g10480
Deletion	Chr10	6441113	6441114	1	LOC_Os10g11672
Deletion	Chr2	7316647	7316649	2	LOC_Os02g13640
Deletion	Chr7	8446354	8446355	1
Deletion	Chr4	9571002	9571003	1
Deletion	Chr9	11346280	11346312	32
Deletion	Chr5	12522477	12522478	1
Deletion	Chr8	12558939	12558940	1	LOC_Os08g20967
Deletion	Chr8	12784001	12816000	31999	7
Deletion	Chr5	12862337	12862338	1
Deletion	Chr11	15767188	15767189	1
Deletion	Chr2	18811396	18811408	12
Deletion	Chr6	20318125	20318132	7
Deletion	Chr5	20355402	20355404	2	LOC_Os05g34340
Deletion	Chr8	22337587	22337607	20
Deletion	Chr11	22722918	22723009	91
Deletion	Chr7	23746668	23746670	2
Deletion	Chr12	27132452	27132462	10
Deletion	Chr1	29585355	29585364	9
Deletion	Chr4	31655346	31655348	2
Deletion	Chr1	31952819	31952820	1
Deletion	Chr1	35896812	35896813	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	35339401	35339428	28
Insertion	Chr1	38875578	38875579	2
Insertion	Chr11	21210026	21210026	1
Insertion	Chr2	12409833	12409841	9
Insertion	Chr2	18040580	18040611	32
Insertion	Chr2	30570679	30570679	1
Insertion	Chr2	9682827	9682827	1
Insertion	Chr4	25970355	25970355	1
Insertion	Chr4	5456370	5456370	1
Insertion	Chr5	13527188	13527188	1
Insertion	Chr5	28195865	28195876	12
Insertion	Chr6	9639783	9639826	44
Insertion	Chr9	12679862	12679862	1	LOC_Os09g21020

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	32257534	33198207	LOC_Os02g54150
Inversion	Chr2	32257552	33198237	LOC_Os02g54150

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr8	2233762	Chr5	28810796
Translocation	Chr12	14995782	Chr11	6169080
Translocation	Chr11	22919283	Chr8	24226575
Translocation	Chr11	22919287	Chr8	24226577

Main menu

You are here

Search Nipponbare