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Mutant Information

Mutant Name	FN3201-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3201-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 55

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21565867	C-T	HET	INTERGENIC
SBS	Chr1	33858130	C-T	HOMO	INTERGENIC
SBS	Chr1	39866290	A-C	HET	INTERGENIC
SBS	Chr1	42964162	T-C	HET	INTRON
SBS	Chr1	7340897	T-C	HET	INTRON
SBS	Chr10	12402023	C-T	HET	INTERGENIC
SBS	Chr10	15212521	T-A	HET	INTERGENIC
SBS	Chr10	7766267	A-T	HET	INTRON
SBS	Chr10	8767805	T-A	HET	INTERGENIC
SBS	Chr11	10084605	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g17954
SBS	Chr11	14298884	T-A	HOMO	INTERGENIC
SBS	Chr11	22547435	C-A	HET	INTERGENIC
SBS	Chr11	22547436	T-A	HET	INTERGENIC
SBS	Chr11	24909714	C-T	HOMO	INTERGENIC
SBS	Chr11	24909715	C-T	HOMO	INTERGENIC
SBS	Chr11	6177661	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g11170
SBS	Chr12	20261963	C-T	HOMO	INTRON
SBS	Chr12	3549348	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g07220
SBS	Chr12	5223266	A-T	HET	INTERGENIC
SBS	Chr2	23037626	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g38110
SBS	Chr2	25339013	T-C	HET	INTRON
SBS	Chr2	33333223	C-A	HET	INTERGENIC
SBS	Chr3	19608220	C-T	HET	INTERGENIC
SBS	Chr3	23600308	C-A	HET	INTERGENIC
SBS	Chr3	33127137	C-A	HOMO	INTERGENIC
SBS	Chr3	4666475	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g08980
SBS	Chr4	10440282	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18770
SBS	Chr4	14481660	C-G	HET	INTERGENIC
SBS	Chr4	2282467	G-T	HET	SYNONYMOUS_CODING
SBS	Chr4	23983731	A-T	HET	INTERGENIC
SBS	Chr4	30480017	C-G	HET	INTERGENIC
SBS	Chr4	3105100	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g06000
SBS	Chr4	34286522	A-T	HET	INTERGENIC
SBS	Chr4	7251710	G-A	HET	UTR_3_PRIME
SBS	Chr5	12512133	G-T	HET	INTERGENIC
SBS	Chr5	28177450	T-G	HET	INTRON
SBS	Chr5	4477189	C-G	HET	INTERGENIC
SBS	Chr5	6519464	T-A	HOMO	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	1938914	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	26320464	C-T	HET	INTERGENIC
SBS	Chr6	3704699	C-T	HET	INTERGENIC
SBS	Chr7	18747133	T-C	HET	INTERGENIC
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	19759102	C-G	HET	INTERGENIC
SBS	Chr7	7091064	T-C	HET	INTERGENIC
SBS	Chr7	8642206	A-G	HET	SYNONYMOUS_CODING
SBS	Chr8	13666597	C-G	HET	INTRON
SBS	Chr9	14594674	G-T	HOMO	INTERGENIC
SBS	Chr9	1795600	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g03610
SBS	Chr9	18725376	C-T	HET	INTERGENIC
SBS	Chr9	1930287	C-T	HOMO	INTERGENIC
SBS	Chr9	21516119	C-A	HET	INTRON
SBS	Chr9	2472431	A-G	HET	INTRON
SBS	Chr9	5784965	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10600

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1522873	1522878	5
Deletion	Chr4	2010043	2010044	1
Deletion	Chr11	2517907	2517914	7
Deletion	Chr6	2565028	2565032	4
Deletion	Chr3	4932893	4932894	1
Deletion	Chr9	5665274	5665275	1
Deletion	Chr10	7212517	7212518	1
Deletion	Chr10	7861315	7861337	22
Deletion	Chr5	8833533	8833535	2
Deletion	Chr4	11982837	11982838	1
Deletion	Chr2	13887698	13887705	7
Deletion	Chr12	16880815	16880821	6
Deletion	Chr5	17139862	17139885	23
Deletion	Chr9	17915637	17915641	4
Deletion	Chr10	20498324	20498327	3	LOC_Os10g38360
Deletion	Chr7	21432652	21432654	2
Deletion	Chr11	23310718	23310720	2
Deletion	Chr11	26022006	26022033	27
Deletion	Chr6	29376763	29376764	1
Deletion	Chr2	30545665	30545670	5
Deletion	Chr2	32559105	32559107	2
Deletion	Chr4	32893831	32893832	1

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	32723184	32723184	1
Insertion	Chr11	14258973	14258978	6
Insertion	Chr11	28105240	28105241	2
Insertion	Chr3	11000223	11000223	1
Insertion	Chr5	14995917	14995917	1
Insertion	Chr5	29750609	29750616	8
Insertion	Chr7	12166680	12166681	2
Insertion	Chr7	3128359	3128426	68
Insertion	Chr7	8555456	8555457	2
Insertion	Chr8	6082318	6082318	1
Insertion	Chr9	11649533	11649554	22
Insertion	Chr9	82311	82313	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1799261	1929995	LOC_Os09g03610
Inversion	Chr9	1800569	1929994

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1799273	Chr3	19845166	LOC_Os09g03610
Translocation	Chr9	1800564	Chr6	26464265
Translocation	Chr8	5173804	Chr6	7992792
Translocation	Chr12	6160266	Chr5	20331531
Translocation	Chr11	7097219	Chr6	1748308
Translocation	Chr12	10883216	Chr2	25322159
Translocation	Chr7	13781043	Chr3	17297502
Translocation	Chr11	15401580	Chr4	18466158
Translocation	Chr6	26464259	Chr3	19845523

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