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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26237238	A-T	HET	INTRON
SBS	Chr1	39447446	T-A	HET	INTERGENIC
SBS	Chr1	41773949	G-A	HET	INTERGENIC
SBS	Chr2	2427553	G-T	HET	INTERGENIC
SBS	Chr2	9382376	T-C	HET	INTERGENIC
SBS	Chr2	13565376	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g22780
SBS	Chr2	18944270	T-C	HET	INTERGENIC
SBS	Chr2	21010276	G-A	HET	INTERGENIC
SBS	Chr3	5776600	T-C	HET	INTERGENIC
SBS	Chr3	5776605	T-C	HET	INTERGENIC
SBS	Chr3	5776613	A-T	HET	INTERGENIC
SBS	Chr3	15818852	A-T	HOMO	INTERGENIC
SBS	Chr3	15818853	A-T	HOMO	INTERGENIC
SBS	Chr3	19773713	T-C	HET	SYNONYMOUS_CODING
SBS	Chr4	1568604	C-T	HET	INTRON
SBS	Chr4	3516912	C-T	HET	INTERGENIC
SBS	Chr4	3516913	C-T	HET	INTERGENIC
SBS	Chr4	9226723	A-G	HOMO	INTRON
SBS	Chr4	14372793	G-A	HOMO	INTRON
SBS	Chr4	17513624	C-T	HET	INTERGENIC
SBS	Chr5	4841108	A-G	HET	INTERGENIC
SBS	Chr5	9196706	G-A	HET	INTERGENIC
SBS	Chr5	20426915	G-C	HET	INTERGENIC
SBS	Chr6	7661209	C-T	HET	INTERGENIC
SBS	Chr7	18526783	A-T	HOMO	INTERGENIC
SBS	Chr7	25697836	T-C	HET	INTRON
SBS	Chr8	4668835	T-C	HOMO	INTERGENIC
SBS	Chr8	18645766	C-A	HET	INTERGENIC
SBS	Chr8	24519321	A-T	HOMO	INTERGENIC
SBS	Chr8	26516176	G-A	HET	INTERGENIC
SBS	Chr9	9316996	G-A	HET	INTERGENIC
SBS	Chr9	13996825	T-A	HET	INTERGENIC
SBS	Chr9	21664146	T-A	HET	INTRON
SBS	Chr10	2922064	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g05790
SBS	Chr10	18798121	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g35190
SBS	Chr11	10556833	A-G	HET	INTERGENIC
SBS	Chr11	21854507	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37020
SBS	Chr12	7132017	T-A	HET	UTR_3_PRIME
SBS	Chr12	26067241	C-A	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1021920	1021921	1	LOC_Os10g02640
Deletion	Chr9	2007884	2007887	3	LOC_Os09g03939
Deletion	Chr6	4568925	4568948	23
Deletion	Chr8	4669311	4669320	9
Deletion	Chr9	4984052	4984058	6
Deletion	Chr7	5056001	5093000	36999	4
Deletion	Chr11	5087741	5087789	48
Deletion	Chr9	7607268	7607269	1
Deletion	Chr11	8438800	8438802	2
Deletion	Chr8	8927001	8998000	70999	10
Deletion	Chr6	9408103	9408106	3
Deletion	Chr8	10761998	10762000	2
Deletion	Chr7	11015001	11030000	14999	2
Deletion	Chr12	11143037	11143044	7	LOC_Os12g19190
Deletion	Chr2	13567123	13567132	9
Deletion	Chr12	16443370	16443371	1
Deletion	Chr9	16701001	16797000	95999	13
Deletion	Chr9	16739566	16739567	1
Deletion	Chr9	16801001	17106000	304999	54
Deletion	Chr5	18228919	18228928	9	LOC_Os05g31360
Deletion	Chr10	18795001	18821000	25999	4
Deletion	Chr3	19722377	19722390	13
Deletion	Chr8	21557800	21557803	3	LOC_Os08g34340
Deletion	Chr1	21760214	21760224	10
Deletion	Chr5	21863696	21863697	1
Deletion	Chr3	23095183	23095186	3	LOC_Os03g41530
Deletion	Chr7	26170120	26170121	1
Deletion	Chr5	29941679	29941680	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	12949264	12949265	2
Insertion	Chr2	18969464	18969466	3	LOC_Os02g32100
Insertion	Chr7	17560179	17560180	2
Insertion	Chr9	9768729	9768734	6
Insertion	Chr1	14045450	14045461	12
Insertion	Chr2	18822027	18822027	1
Insertion	Chr3	25527866	25527893	28
Insertion	Chr9	11354282	11354295	14
Insertion	Chr9	19095800	19095815	16
Insertion	Chr12	25059689	25059710	22

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5056154	5256982
Inversion	Chr12	6924707	7141360
Inversion	Chr12	6924756	7141365
Inversion	Chr2	9240368	9240597	LOC_Os02g16260
Inversion	Chr2	26544654	26544785
Inversion	Chr2	29987904	29988184

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5093027	Chr6	28122203
Translocation	Chr8	8926577	Chr6	25354027
Translocation	Chr8	8998124	Chr6	25353075
Translocation	Chr7	13076809	Chr6	28120968	LOC_Os07g23200
Translocation	Chr11	19200649	Chr9	4333986

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