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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14114443	T-C	HET	INTERGENIC
SBS	Chr1	34967239	A-G	HET	INTERGENIC
SBS	Chr1	40714769	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	17246635	T-A	HET	INTERGENIC
SBS	Chr10	17246636	C-A	HET	INTERGENIC
SBS	Chr10	4248438	G-C	HET	INTERGENIC
SBS	Chr11	16159965	A-G	HOMO	INTRON
SBS	Chr11	27380200	C-T	HET	INTRON
SBS	Chr11	3185664	C-T	HET	INTERGENIC
SBS	Chr12	15106888	A-T	HET	INTERGENIC
SBS	Chr12	2576831	C-T	HET	INTERGENIC
SBS	Chr12	7244519	A-T	HET	INTERGENIC
SBS	Chr12	9453348	G-T	HOMO	INTERGENIC
SBS	Chr2	20242257	G-C	HET	INTRON
SBS	Chr2	21517943	G-T	HET	INTERGENIC
SBS	Chr2	2586433	C-T	HET	INTERGENIC
SBS	Chr2	30039051	C-T	HET	INTRON
SBS	Chr3	1423224	G-T	HET	INTERGENIC
SBS	Chr3	17111014	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g30000
SBS	Chr3	24545904	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g43810
SBS	Chr3	32586268	T-A	HET	INTERGENIC
SBS	Chr3	33080633	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g58100
SBS	Chr3	34452080	G-T	HOMO	INTERGENIC
SBS	Chr3	4974271	A-C	HET	INTERGENIC
SBS	Chr3	7760508	G-C	HET	INTRON
SBS	Chr4	25558151	G-A	HET	INTERGENIC
SBS	Chr5	11317443	T-G	HOMO	UTR_3_PRIME
SBS	Chr5	12422397	T-A	HOMO	INTRON
SBS	Chr5	15499946	C-A	HOMO	INTERGENIC
SBS	Chr5	8911276	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g15790
SBS	Chr6	22047735	C-T	HET	INTERGENIC
SBS	Chr6	4254466	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	8683841	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	250500	C-A	HET	INTERGENIC
SBS	Chr7	26332081	C-G	HET	INTERGENIC
SBS	Chr7	27169821	T-C	HET	INTERGENIC
SBS	Chr9	8052774	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	118047	118053	6
Deletion	Chr12	3693831	3693855	24
Deletion	Chr9	5694911	5694934	23
Deletion	Chr7	7900124	7900126	2
Deletion	Chr3	7938081	7938082	1
Deletion	Chr8	8347863	8347875	12
Deletion	Chr7	10887714	10887717	3
Deletion	Chr8	12467996	12467997	1
Deletion	Chr7	14606022	14606024	2
Deletion	Chr11	14660001	14831000	170999	26
Deletion	Chr5	14718789	14718805	16
Deletion	Chr2	14819257	14819258	1
Deletion	Chr11	18214172	18214173	1
Deletion	Chr7	18250799	18250801	2
Deletion	Chr10	20858079	20858088	9
Deletion	Chr4	24596600	24596608	8
Deletion	Chr4	24799153	24799164	11
Deletion	Chr2	25319069	25319095	26
Deletion	Chr7	26841027	26841028	1
Deletion	Chr5	27924496	27924501	5	LOC_Os05g48720
Deletion	Chr3	30851576	30851578	2
Deletion	Chr3	34343377	34343389	12
Deletion	Chr4	34793175	34793178	3	LOC_Os04g58504
Deletion	Chr2	35446630	35446636	6

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	34103710	34103719	10
Insertion	Chr1	4354515	4354534	20
Insertion	Chr11	21327555	21327555	1
Insertion	Chr12	6077983	6077988	6
Insertion	Chr4	13744416	13744416	1	LOC_Os04g24060
Insertion	Chr4	5317419	5317461	43
Insertion	Chr5	20839318	20839386	69
Insertion	Chr5	2289603	2289618	16
Insertion	Chr5	666162	666200	39
Insertion	Chr8	15935106	15935106	1
Insertion	Chr8	28203544	28203551	8

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1350381	1380449
Inversion	Chr10	1350389	1380457
Inversion	Chr3	5135821	5328748	LOC_Os03g10469
Inversion	Chr3	5135822	5328749	LOC_Os03g10469
Inversion	Chr4	13412945	13431354
Inversion	Chr6	28765656	29086514	2

No Translocation

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