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Mutant Information |
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Mutant Name | FN3205-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3205-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 71
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 15800981 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g28200 |
SBS | Chr1 | 27793165 | G-T | HET | SYNONYMOUS_CODING | |
SBS | Chr1 | 29798084 | G-A | HOMO | INTRON | |
SBS | Chr1 | 35634409 | C-G | HOMO | INTERGENIC | |
SBS | Chr1 | 8125338 | A-T | HOMO | INTERGENIC | |
SBS | Chr10 | 11089878 | C-A | HET | UTR_3_PRIME | |
SBS | Chr10 | 12340654 | T-C | HET | UTR_3_PRIME | |
SBS | Chr10 | 15761109 | G-T | HET | INTERGENIC | |
SBS | Chr10 | 21128522 | C-G | HOMO | START_GAINED | |
SBS | Chr10 | 21186681 | C-T | HOMO | INTERGENIC | |
SBS | Chr10 | 9361416 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 11391278 | C-A | HET | UTR_5_PRIME | |
SBS | Chr11 | 11391279 | T-A | HET | START_GAINED | |
SBS | Chr11 | 11391283 | G-A | HET | START_GAINED | |
SBS | Chr11 | 14480752 | G-A | HET | INTRON | |
SBS | Chr11 | 21309989 | C-T | HOMO | INTERGENIC | |
SBS | Chr11 | 23429326 | A-G | HOMO | UTR_3_PRIME | |
SBS | Chr11 | 26244572 | C-A | HET | STOP_GAINED | LOC_Os11g43460 |
SBS | Chr11 | 27411338 | G-T | HET | INTRON | |
SBS | Chr12 | 11596671 | A-G | HOMO | INTERGENIC | |
SBS | Chr12 | 20437176 | G-A | HET | STOP_GAINED | LOC_Os12g33910 |
SBS | Chr12 | 26423537 | A-G | HOMO | INTERGENIC | |
SBS | Chr2 | 10199560 | T-A | HOMO | INTRON | |
SBS | Chr2 | 15711189 | T-G | HET | INTERGENIC | |
SBS | Chr2 | 19266089 | T-C | HET | INTERGENIC | |
SBS | Chr2 | 20172946 | A-G | HET | INTERGENIC | |
SBS | Chr2 | 20583846 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 21579150 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 14257037 | A-G | HET | INTRON | |
SBS | Chr3 | 17446582 | G-T | HET | INTERGENIC | |
SBS | Chr3 | 2534516 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g05225 |
SBS | Chr4 | 15325223 | C-A | HOMO | STOP_GAINED | LOC_Os04g26290 |
SBS | Chr4 | 17456233 | C-A | HET | INTERGENIC | |
SBS | Chr4 | 17546461 | T-C | HET | INTERGENIC | |
SBS | Chr4 | 19045630 | C-T | HET | INTRON | |
SBS | Chr4 | 20266139 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 30579873 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr4 | 35451434 | T-C | HET | INTERGENIC | |
SBS | Chr5 | 10070554 | C-G | HET | INTERGENIC | |
SBS | Chr5 | 11263159 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g19390 |
SBS | Chr5 | 15544747 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 18217872 | T-C | HET | INTRON | |
SBS | Chr5 | 19821819 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 20369899 | T-A | HET | INTERGENIC | |
SBS | Chr5 | 28106160 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 4037531 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g07540 |
SBS | Chr5 | 4037532 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g07540 |
SBS | Chr5 | 7486552 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 9969673 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 15991610 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g28150 |
SBS | Chr6 | 20211010 | G-A | HOMO | INTERGENIC | |
SBS | Chr6 | 24767033 | T-C | HET | INTERGENIC | |
SBS | Chr6 | 25778143 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 8991290 | A-T | HET | INTERGENIC | |
SBS | Chr7 | 14474491 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 20934425 | G-T | HET | INTERGENIC | |
SBS | Chr7 | 22539782 | G-A | HET | INTRON | |
SBS | Chr7 | 22707921 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g37860 |
SBS | Chr7 | 23781004 | A-T | HET | INTERGENIC | |
SBS | Chr7 | 27002524 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g45250 |
SBS | Chr7 | 6814662 | T-A | HOMO | INTERGENIC | |
SBS | Chr8 | 10139035 | T-C | HET | INTRON | |
SBS | Chr8 | 14338814 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 17834544 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr8 | 5887719 | T-C | HET | INTRON | |
SBS | Chr8 | 6593192 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 6939792 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 7514005 | C-G | HET | INTERGENIC | |
SBS | Chr9 | 21241978 | A-G | HET | INTRON | |
SBS | Chr9 | 326331 | C-G | HET | INTRON | |
SBS | Chr9 | 8324135 | A-G | HET | INTERGENIC |
Deletions: 16
Insertions: 9
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 9360357 | 9751265 | LOC_Os09g15950 |
Inversion | Chr9 | 9360360 | 9751276 | LOC_Os09g15950 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 15134517 | Chr10 | 4882462 | |
Translocation | Chr7 | 19449063 | Chr1 | 12115016 | |
Translocation | Chr11 | 29013921 | Chr1 | 38920196 | LOC_Os11g48110 |
Translocation | Chr11 | 29013926 | Chr1 | 38920506 | LOC_Os11g48110 |