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Mutant Information

Mutant NameFN3205-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3205-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 71
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr115800981C-THOMONON_SYNONYMOUS_CODINGLOC_Os01g28200
SBSChr127793165G-THETSYNONYMOUS_CODING
SBSChr129798084G-AHOMOINTRON
SBSChr135634409C-GHOMOINTERGENIC
SBSChr18125338A-THOMOINTERGENIC
SBSChr1011089878C-AHETUTR_3_PRIME
SBSChr1012340654T-CHETUTR_3_PRIME
SBSChr1015761109G-THETINTERGENIC
SBSChr1021128522C-GHOMOSTART_GAINED
SBSChr1021186681C-THOMOINTERGENIC
SBSChr109361416C-AHETINTERGENIC
SBSChr1111391278C-AHETUTR_5_PRIME
SBSChr1111391279T-AHETSTART_GAINED
SBSChr1111391283G-AHETSTART_GAINED
SBSChr1114480752G-AHETINTRON
SBSChr1121309989C-THOMOINTERGENIC
SBSChr1123429326A-GHOMOUTR_3_PRIME
SBSChr1126244572C-AHETSTOP_GAINEDLOC_Os11g43460
SBSChr1127411338G-THETINTRON
SBSChr1211596671A-GHOMOINTERGENIC
SBSChr1220437176G-AHETSTOP_GAINEDLOC_Os12g33910
SBSChr1226423537A-GHOMOINTERGENIC
SBSChr210199560T-AHOMOINTRON
SBSChr215711189T-GHETINTERGENIC
SBSChr219266089T-CHETINTERGENIC
SBSChr220172946A-GHETINTERGENIC
SBSChr220583846G-AHETINTERGENIC
SBSChr221579150C-THETINTERGENIC
SBSChr314257037A-GHETINTRON
SBSChr317446582G-THETINTERGENIC
SBSChr32534516C-THETNON_SYNONYMOUS_CODINGLOC_Os03g05225
SBSChr415325223C-AHOMOSTOP_GAINEDLOC_Os04g26290
SBSChr417456233C-AHETINTERGENIC
SBSChr417546461T-CHETINTERGENIC
SBSChr419045630C-THETINTRON
SBSChr420266139C-THETINTERGENIC
SBSChr430579873G-AHETSYNONYMOUS_CODING
SBSChr435451434T-CHETINTERGENIC
SBSChr510070554C-GHETINTERGENIC
SBSChr511263159A-THETNON_SYNONYMOUS_CODINGLOC_Os05g19390
SBSChr515544747C-THETINTERGENIC
SBSChr518217872T-CHETINTRON
SBSChr519821819G-AHETINTERGENIC
SBSChr520369899T-AHETINTERGENIC
SBSChr528106160G-AHETINTERGENIC
SBSChr54037531C-THETNON_SYNONYMOUS_CODINGLOC_Os05g07540
SBSChr54037532C-AHETNON_SYNONYMOUS_CODINGLOC_Os05g07540
SBSChr57486552G-AHETINTERGENIC
SBSChr59969673G-AHETINTERGENIC
SBSChr615991610C-GHOMONON_SYNONYMOUS_CODINGLOC_Os06g28150
SBSChr620211010G-AHOMOINTERGENIC
SBSChr624767033T-CHETINTERGENIC
SBSChr625778143G-AHETINTERGENIC
SBSChr68991290A-THETINTERGENIC
SBSChr714474491C-THETINTERGENIC
SBSChr720934425G-THETINTERGENIC
SBSChr722539782G-AHETINTRON
SBSChr722707921G-AHOMONON_SYNONYMOUS_CODINGLOC_Os07g37860
SBSChr723781004A-THETINTERGENIC
SBSChr727002524T-CHETNON_SYNONYMOUS_CODINGLOC_Os07g45250
SBSChr76814662T-AHOMOINTERGENIC
SBSChr810139035T-CHETINTRON
SBSChr814338814G-AHETINTERGENIC
SBSChr817834544G-AHETSYNONYMOUS_CODING
SBSChr85887719T-CHETINTRON
SBSChr86593192G-AHETINTERGENIC
SBSChr86939792G-AHETINTERGENIC
SBSChr87514005C-GHETINTERGENIC
SBSChr921241978A-GHETINTRON
SBSChr9326331C-GHETINTRON
SBSChr98324135A-GHETINTERGENIC

Deletions: 16
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr123191973192003
DeletionChr9328836332883652
DeletionChr8469875846987624
DeletionChr5535514953551501
DeletionChr18125568812558315
DeletionChr710087133100871374
DeletionChr810271198102711991
DeletionChr812099593120995996
DeletionChr712148653121486541
DeletionChr616231488162314891
DeletionChr616745240167452433
DeletionChr317790813177908141
DeletionChr722959066229590682
DeletionChr627242568272425779
DeletionChr6309430783094309517
DeletionChr132220399322204012

Insertions: 9
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1020410491204104911
InsertionChr1213936907139369071
InsertionChr12191671841916719916
InsertionChr123375375337540632
InsertionChr514613075146130751
InsertionChr622479504224795052
InsertionChr7979917997991802
InsertionChr817440802174408032
InsertionChr910581704105817041

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr993603579751265LOC_Os09g15950
InversionChr993603609751276LOC_Os09g15950

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr1115134517Chr104882462
TranslocationChr719449063Chr112115016
TranslocationChr1129013921Chr138920196LOC_Os11g48110
TranslocationChr1129013926Chr138920506LOC_Os11g48110