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Mutant Information

Mutant Name	FN3206-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3206-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14197949	G-T	HET	INTERGENIC
SBS	Chr1	15132939	G-T	HET	INTRON
SBS	Chr1	18342935	G-A	HET	INTERGENIC
SBS	Chr1	19644929	T-G	HET	INTERGENIC
SBS	Chr1	39401987	T-A	HET	INTERGENIC
SBS	Chr10	13638524	C-T	HET	INTERGENIC
SBS	Chr11	25586232	C-T	HET	INTERGENIC
SBS	Chr11	3388750	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g06900
SBS	Chr12	19238706	T-G	HET	INTERGENIC
SBS	Chr12	25370365	G-C	HET	INTERGENIC
SBS	Chr12	9670152	T-A	HET	SYNONYMOUS_CODING
SBS	Chr2	12003384	G-C	HET	INTERGENIC
SBS	Chr2	13688076	G-A	HET	INTERGENIC
SBS	Chr2	20675893	T-A	HOMO	INTERGENIC
SBS	Chr2	2233850	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g04840
SBS	Chr2	32025504	T-C	HOMO	INTRON
SBS	Chr3	16334768	C-T	HET	INTRON
SBS	Chr3	17588365	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30870
SBS	Chr3	17588366	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30870
SBS	Chr3	30866405	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	4531487	C-A	HET	INTERGENIC
SBS	Chr4	12181183	G-A	HOMO	INTERGENIC
SBS	Chr4	31298056	G-A	HET	INTERGENIC
SBS	Chr4	34420064	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57800
SBS	Chr4	6460988	C-T	HET	INTERGENIC
SBS	Chr4	8372406	C-T	HOMO	INTERGENIC
SBS	Chr4	8372407	G-T	HOMO	INTERGENIC
SBS	Chr5	10088856	G-A	HET	INTERGENIC
SBS	Chr5	15653345	G-C	HET	INTERGENIC
SBS	Chr5	23576558	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g40140
SBS	Chr5	27807578	A-T	HET	UTR_3_PRIME
SBS	Chr5	29371149	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51200
SBS	Chr5	4501600	G-A	HOMO	INTRON
SBS	Chr5	4501601	C-A	HOMO	INTRON
SBS	Chr6	15799910	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g27880
SBS	Chr6	23919704	G-T	HET	INTERGENIC
SBS	Chr6	24475241	C-T	HET	INTERGENIC
SBS	Chr6	26720754	C-T	HET	INTERGENIC
SBS	Chr6	5220116	A-G	HET	INTERGENIC
SBS	Chr6	5644815	C-T	HET	INTERGENIC
SBS	Chr7	21175711	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g35410
SBS	Chr8	2088410	T-A	HOMO	INTRON
SBS	Chr8	28320602	C-T	HET	INTERGENIC
SBS	Chr8	8743079	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14540
SBS	Chr8	8743080	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14540
SBS	Chr8	8743081	T-A	HET	SYNONYMOUS_CODING

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	772706	772732	26	LOC_Os01g02400
Deletion	Chr5	4038957	4038958	1	LOC_Os05g07540
Deletion	Chr3	4161416	4161417	1
Deletion	Chr12	5612246	5612251	5	LOC_Os12g10570
Deletion	Chr12	5633839	5633865	26
Deletion	Chr9	8889993	8890036	43	LOC_Os09g14890
Deletion	Chr7	9327184	9327189	5
Deletion	Chr5	10673594	10673597	3	LOC_Os05g18470
Deletion	Chr8	11082409	11082414	5
Deletion	Chr7	11097386	11097389	3
Deletion	Chr12	11237460	11237466	6
Deletion	Chr7	11673723	11673727	4	LOC_Os07g20240
Deletion	Chr12	12246666	12246667	1
Deletion	Chr8	14010832	14010833	1
Deletion	Chr6	14781485	14781486	1	LOC_Os06g25270
Deletion	Chr5	14906059	14906066	7
Deletion	Chr11	14924909	14924914	5
Deletion	Chr11	15085244	15085245	1	LOC_Os11g26360
Deletion	Chr7	15933411	15933412	1
Deletion	Chr8	16157175	16157176	1
Deletion	Chr9	16912001	16922000	9999	2
Deletion	Chr4	17436802	17436803	1
Deletion	Chr1	19347813	19347815	2
Deletion	Chr6	20057752	20057762	10
Deletion	Chr7	21192256	21192257	1
Deletion	Chr2	21836679	21836680	1
Deletion	Chr2	24155518	24155527	9
Deletion	Chr2	24782205	24782215	10
Deletion	Chr7	26148710	26148723	13
Deletion	Chr4	27468401	27468421	20
Deletion	Chr3	29440814	29440816	2
Deletion	Chr4	31482677	31482678	1
Deletion	Chr2	32223953	32223954	1
Deletion	Chr1	32950792	32950794	2

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	14551044	14551099	56
Insertion	Chr1	32407123	32407124	2
Insertion	Chr1	37261682	37261682	1	LOC_Os01g64150
Insertion	Chr10	6366909	6366910	2
Insertion	Chr11	25113040	25113053	14
Insertion	Chr11	6492113	6492116	4
Insertion	Chr12	9301612	9301671	60
Insertion	Chr2	17778002	17778003	2
Insertion	Chr2	25626119	25626130	12
Insertion	Chr3	23942107	23942107	1
Insertion	Chr3	5338625	5338626	2
Insertion	Chr4	31229861	31229862	2
Insertion	Chr4	785489	785489	1
Insertion	Chr5	3181348	3181348	1
Insertion	Chr6	10515233	10515233	1
Insertion	Chr6	18338741	18338741	1	LOC_Os06g31540
Insertion	Chr7	1795177	1795180	4
Insertion	Chr9	19038128	19038133	6
Insertion	Chr9	19095800	19095821	22

Inversions: 12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8371378	8373110
Inversion	Chr10	10704913	10705082
Inversion	Chr3	13441472	13809003
Inversion	Chr6	13904269	13908401
Inversion	Chr10	14559211	14559378	LOC_Os10g28050
Inversion	Chr3	17244567	17588948	LOC_Os03g30870
Inversion	Chr9	22622635	22622819	LOC_Os09g39334
Inversion	Chr5	24148261	24148544
Inversion	Chr6	24577202	24577353	LOC_Os06g41110
Inversion	Chr5	27217156	27217364	LOC_Os05g47500
Inversion	Chr1	33924538	34099828	2
Inversion	Chr1	33924540	34099839	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	4684508	Chr1	35071531	LOC_Os03g09020
Translocation	Chr3	4684883	Chr1	35071534	LOC_Os03g09020
Translocation	Chr5	8834510	Chr3	13387694

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