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Mutant Information

Mutant Name	FN3209-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3209-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 50

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14203366	C-A	HET	INTERGENIC
SBS	Chr1	30888588	T-C	HET	INTERGENIC
SBS	Chr1	33343499	C-T	HET	INTERGENIC
SBS	Chr1	39242048	T-A	HET	INTRON
SBS	Chr1	8318510	T-C	HET	INTERGENIC
SBS	Chr10	13081720	T-C	HET	INTRON
SBS	Chr10	17352060	C-T	HET	INTERGENIC
SBS	Chr11	21253718	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g36150
SBS	Chr11	23388900	G-A	HET	INTERGENIC
SBS	Chr11	26664039	C-T	HET	INTERGENIC
SBS	Chr11	3443825	G-T	HET	INTERGENIC
SBS	Chr11	3742903	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07440
SBS	Chr11	3742904	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07440
SBS	Chr2	14508501	G-C	HET	SYNONYMOUS_CODING
SBS	Chr2	17309227	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g29190
SBS	Chr2	22403251	A-G	HET	INTERGENIC
SBS	Chr2	25105827	C-T	HET	INTERGENIC
SBS	Chr2	25105828	A-T	HET	INTERGENIC
SBS	Chr2	32247039	A-G	HET	INTERGENIC
SBS	Chr2	7948498	C-G	HET	INTERGENIC
SBS	Chr2	7950255	G-T	HET	INTERGENIC
SBS	Chr3	15470672	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27019
SBS	Chr3	20535714	G-A	HET	INTERGENIC
SBS	Chr3	29657198	G-A	HET	INTERGENIC
SBS	Chr3	32660776	T-A	HOMO	INTERGENIC
SBS	Chr4	27097238	G-A	HET	INTERGENIC
SBS	Chr5	15437544	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26570
SBS	Chr5	16258701	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g27870
SBS	Chr5	29331283	G-T	HET	INTERGENIC
SBS	Chr5	29331284	G-T	HET	INTERGENIC
SBS	Chr6	11327716	T-C	HET	INTRON
SBS	Chr6	12800346	G-A	HET	UTR_3_PRIME
SBS	Chr6	15582735	G-C	HET	INTERGENIC
SBS	Chr6	16051742	T-A	HET	INTERGENIC
SBS	Chr6	1734219	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g04150
SBS	Chr6	3665743	A-T	HET	INTERGENIC
SBS	Chr6	7088330	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	10290187	C-T	HET	INTERGENIC
SBS	Chr7	10509638	G-A	HET	INTRON
SBS	Chr7	29362742	C-T	HET	INTERGENIC
SBS	Chr7	361688	A-T	HET	INTERGENIC
SBS	Chr7	6975773	C-T	HET	INTERGENIC
SBS	Chr7	8630645	C-A	HET	SYNONYMOUS_CODING
SBS	Chr8	15820563	T-C	HET	INTERGENIC
SBS	Chr8	507441	C-T	HOMO	INTERGENIC
SBS	Chr8	507442	C-T	HOMO	INTERGENIC
SBS	Chr8	7266618	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12330
SBS	Chr9	11181777	T-C	HOMO	INTRON
SBS	Chr9	11927238	A-G	HOMO	INTERGENIC
SBS	Chr9	17733054	G-A	HET	SYNONYMOUS_CODING

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	955522	955523	1
Deletion	Chr10	1220827	1220828	1	LOC_Os10g02960
Deletion	Chr4	2417605	2417611	6	LOC_Os04g04990
Deletion	Chr10	3316093	3316094	1
Deletion	Chr2	5959730	5959741	11
Deletion	Chr12	10300674	10300676	2	LOC_Os12g17920
Deletion	Chr12	10637349	10637355	6
Deletion	Chr9	15253617	15253620	3
Deletion	Chr8	15328001	15348000	19999	5
Deletion	Chr4	15347574	15347576	2
Deletion	Chr4	17325995	17325996	1
Deletion	Chr12	19830433	19830439	6
Deletion	Chr8	20615596	20615600	4
Deletion	Chr2	21556760	21556761	1
Deletion	Chr1	22336620	22336622	2
Deletion	Chr10	22440219	22440221	2
Deletion	Chr3	22571693	22571694	1
Deletion	Chr2	24875560	24875565	5
Deletion	Chr3	25880704	25880707	3
Deletion	Chr2	26739986	26739987	1
Deletion	Chr6	27164760	27164762	2
Deletion	Chr11	28607685	28607686	1
Deletion	Chr2	30173658	30173659	1
Deletion	Chr6	30869443	30869444	1	LOC_Os06g51010
Deletion	Chr1	37055444	37055445	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	17189074	17189074	1
Insertion	Chr12	8223313	8223313	1
Insertion	Chr5	664252	664257	6
Insertion	Chr6	9566688	9566689	2
Insertion	Chr7	25225523	25225566	44

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr8	512084	589700
Inversion	Chr8	512098	589707
Inversion	Chr1	2981348	2981541
Inversion	Chr6	15855815	16262307
Inversion	Chr6	15855818	16262307

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	3393664	Chr10	2180845
Translocation	Chr11	3396667	Chr10	2180416
Translocation	Chr8	9498458	Chr7	25287873
Translocation	Chr6	13546816	Chr4	3152700
Translocation	Chr11	20126934	Chr3	8265184

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