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Mutant Information

Mutant Name	FN321-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN321-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1298208	G-A	HET	INTERGENIC
SBS	Chr1	18967137	A-C	HET	INTRON
SBS	Chr1	22988498	T-A	HET	UTR_5_PRIME
SBS	Chr1	22988499	T-A	HET	UTR_5_PRIME
SBS	Chr1	34256216	A-T	HET	INTERGENIC
SBS	Chr2	12544330	G-T	HOMO	INTERGENIC
SBS	Chr2	21204885	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	23016808	C-T	HOMO	INTERGENIC
SBS	Chr2	30601786	G-A	HET	INTERGENIC
SBS	Chr3	33302240	T-A	HOMO	INTERGENIC
SBS	Chr4	15167383	G-A	HOMO	INTRON
SBS	Chr4	30289705	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g51150
SBS	Chr5	2499119	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g05130
SBS	Chr5	14400780	C-T	HET	INTRON
SBS	Chr5	21185963	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g35650
SBS	Chr5	28716083	C-A	HET	INTERGENIC
SBS	Chr7	21683175	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36270
SBS	Chr7	23275543	C-A	HET	INTRON
SBS	Chr8	772509	T-G	HOMO	INTERGENIC
SBS	Chr8	8130659	C-A	HOMO	INTERGENIC
SBS	Chr9	4928181	G-T	HET	INTERGENIC
SBS	Chr9	15896444	A-T	HET	UTR_3_PRIME
SBS	Chr11	10278393	G-A	HET	INTERGENIC
SBS	Chr11	12924815	T-C	HET	INTERGENIC
SBS	Chr11	14578552	G-A	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	398857	398858	1
Deletion	Chr8	1135482	1135490	8
Deletion	Chr9	2314701	2314704	3
Deletion	Chr9	3621551	3621552	1	LOC_Os09g07320
Deletion	Chr2	4271129	4271138	9
Deletion	Chr12	4719346	4719360	14
Deletion	Chr9	10774609	10774610	1
Deletion	Chr9	11570579	11570586	7
Deletion	Chr4	13659096	13659099	3
Deletion	Chr2	15319121	15319136	15
Deletion	Chr4	18933346	18933367	21
Deletion	Chr5	21295767	21295770	3
Deletion	Chr5	24366913	24366924	11
Deletion	Chr6	25838122	25838123	1
Deletion	Chr1	26807802	26807824	22
Deletion	Chr2	27032925	27032929	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	6154084	6154087	4
Insertion	Chr2	16994183	16994185	3
Insertion	Chr4	20356376	20356377	2
Insertion	Chr9	10327470	10327471	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1515593	3118758
Inversion	Chr9	4168525	4915039	LOC_Os09g08072
Inversion	Chr1	12903053	13199894	LOC_Os01g22954
Inversion	Chr1	12903126	13199900	LOC_Os01g22954

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	3234375	Chr1	23346976
Translocation	Chr5	22672582	Chr2	24434906	2
Translocation	Chr3	34394763	Chr2	31696446	2

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