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Mutant Information

Mutant Name	FN3211-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3211-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12032286	C-T	HET	INTERGENIC
SBS	Chr1	13378877	T-C	HET	INTERGENIC
SBS	Chr1	1814490	T-G	HET	INTERGENIC
SBS	Chr1	19537963	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	29542577	G-A	HET	INTERGENIC
SBS	Chr1	34919998	G-C	HET	INTERGENIC
SBS	Chr1	7545707	A-G	HET	INTERGENIC
SBS	Chr1	9208525	G-A	HOMO	INTRON
SBS	Chr10	21226056	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39710
SBS	Chr10	22899129	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g42470
SBS	Chr10	3230086	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	5085353	C-T	HET	INTRON
SBS	Chr11	1221348	G-A	HET	INTERGENIC
SBS	Chr11	3150608	C-T	HET	INTRON
SBS	Chr12	12303348	A-G	HET	INTERGENIC
SBS	Chr12	20787002	T-C	HOMO	INTRON
SBS	Chr12	20839151	T-C	HOMO	INTRON
SBS	Chr12	21080041	G-A	HOMO	INTERGENIC
SBS	Chr12	21120915	G-T	HOMO	INTERGENIC
SBS	Chr12	21120923	A-G	HOMO	INTERGENIC
SBS	Chr12	343635	A-G	HOMO	INTERGENIC
SBS	Chr12	3603510	T-G	HOMO	INTRON
SBS	Chr2	10176695	G-A	HET	INTERGENIC
SBS	Chr2	10827294	T-C	HET	INTERGENIC
SBS	Chr2	12690831	C-G	HET	INTERGENIC
SBS	Chr2	23513813	G-A	HET	INTRON
SBS	Chr2	29470724	C-T	HET	INTERGENIC
SBS	Chr2	4140992	C-T	HET	INTERGENIC
SBS	Chr2	6579241	T-C	HET	INTRON
SBS	Chr3	28501288	G-A	HOMO	INTRON
SBS	Chr3	7331711	A-T	HOMO	INTRON
SBS	Chr4	21705714	T-A	HET	INTERGENIC
SBS	Chr4	3036608	C-A	HOMO	INTERGENIC
SBS	Chr4	35206730	T-A	HET	INTERGENIC
SBS	Chr4	7909466	A-C	HET	INTERGENIC
SBS	Chr4	7962905	C-T	HOMO	INTRON
SBS	Chr5	14281927	G-T	HOMO	INTRON
SBS	Chr5	19288487	T-C	HOMO	INTRON
SBS	Chr5	4156021	A-C	HOMO	INTERGENIC
SBS	Chr5	5679153	G-A	HET	INTERGENIC
SBS	Chr6	8462	G-A	HET	INTERGENIC
SBS	Chr8	2102491	C-T	HET	INTERGENIC
SBS	Chr8	5008414	A-G	HET	INTERGENIC
SBS	Chr8	5612175	A-T	HET	UTR_3_PRIME
SBS	Chr9	13141541	A-T	HET	UTR_3_PRIME
SBS	Chr9	4107808	C-G	HOMO	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1118016	1118018	2
Deletion	Chr3	2087842	2087845	3
Deletion	Chr9	4286915	4286919	4	LOC_Os09g08290
Deletion	Chr12	5029953	5029983	30
Deletion	Chr2	7832011	7832129	118
Deletion	Chr12	8437178	8437180	2
Deletion	Chr6	8600695	8600762	67
Deletion	Chr10	9013664	9013665	1
Deletion	Chr5	10194262	10194273	11
Deletion	Chr1	11184213	11184217	4	LOC_Os01g19720
Deletion	Chr6	11475343	11475349	6
Deletion	Chr8	15395839	15395841	2
Deletion	Chr3	17431215	17431216	1
Deletion	Chr5	17609575	17609577	2
Deletion	Chr11	18909432	18909434	2
Deletion	Chr10	19136053	19136054	1
Deletion	Chr5	20318970	20318975	5
Deletion	Chr2	20395414	20395416	2
Deletion	Chr2	22091028	22091029	1
Deletion	Chr12	24855745	24855746	1
Deletion	Chr4	26231761	26231763	2
Deletion	Chr11	26299305	26299306	1
Deletion	Chr12	26475409	26475410	1
Deletion	Chr6	26763371	26763375	4
Deletion	Chr8	27625588	27625590	2
Deletion	Chr6	27972297	27972311	14
Deletion	Chr4	28976013	28976015	2
Deletion	Chr1	38090641	38090642	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	17317441	17317448	8
Insertion	Chr2	7716508	7716508	1
Insertion	Chr3	12760317	12760318	2
Insertion	Chr3	8881988	8881988	1
Insertion	Chr4	20056184	20056184	1
Insertion	Chr4	690433	690458	26
Insertion	Chr5	26651070	26651071	2
Insertion	Chr8	26877346	26877347	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	20788653	21122323
Inversion	Chr12	20788665	21122332
Inversion	Chr8	21257930	21500741	LOC_Os08g33950
Inversion	Chr8	21257946	21470779	LOC_Os08g33950
Inversion	Chr4	27641403	27641618	LOC_Os04g46620

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9573937	Chr1	6540105
Translocation	Chr12	9917951	Chr4	6963432

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