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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	338243	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g01689
SBS	Chr1	4540825	G-T	HET	INTERGENIC
SBS	Chr1	11165094	C-T	HOMO	INTERGENIC
SBS	Chr1	18472411	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g33560
SBS	Chr1	21209598	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g37880
SBS	Chr1	41640734	A-G	HET	INTERGENIC
SBS	Chr2	465177	C-A	HET	INTERGENIC
SBS	Chr2	2463858	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g05150
SBS	Chr3	16189539	A-C	HET	INTRON
SBS	Chr3	16887670	C-G	HET	INTERGENIC
SBS	Chr3	23033924	A-T	HOMO	INTERGENIC
SBS	Chr4	6396701	C-G	HET	INTERGENIC
SBS	Chr4	22390494	A-T	HET	INTRON
SBS	Chr4	26533653	A-C	HET	UTR_5_PRIME
SBS	Chr5	2417863	C-T	HET	STOP_GAINED	LOC_Os05g04990
SBS	Chr5	9878616	C-A	HET	SYNONYMOUS_CODING
SBS	Chr5	10309490	C-T	HET	INTRON
SBS	Chr5	12150645	C-T	HET	INTERGENIC
SBS	Chr5	20399563	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	13357467	G-A	HET	INTERGENIC
SBS	Chr6	24421377	T-C	HOMO	INTERGENIC
SBS	Chr6	27298457	C-T	HOMO	INTERGENIC
SBS	Chr6	27298458	T-A	HOMO	INTERGENIC
SBS	Chr7	4121150	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g08120
SBS	Chr8	16090852	C-G	HOMO	INTERGENIC
SBS	Chr8	23639259	C-T	HET	INTERGENIC
SBS	Chr8	24339629	G-C	HET	INTERGENIC
SBS	Chr9	12443981	A-T	HOMO	INTRON
SBS	Chr10	3053177	A-G	HET	INTERGENIC
SBS	Chr10	7338360	G-C	HET	SYNONYMOUS_CODING
SBS	Chr10	17338261	C-T	HET	INTERGENIC
SBS	Chr11	8116795	G-A	HOMO	INTRON
SBS	Chr11	17106903	C-T	HET	INTERGENIC
SBS	Chr12	10723105	A-G	HET	INTERGENIC
SBS	Chr12	13733859	G-T	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	461059	461061	2
Deletion	Chr5	2698006	2698008	2
Deletion	Chr11	9785812	9785824	12
Deletion	Chr4	12059341	12059342	1
Deletion	Chr11	12647428	12647429	1
Deletion	Chr7	13616580	13616581	1
Deletion	Chr10	15633338	15633340	2
Deletion	Chr10	16514062	16514068	6
Deletion	Chr8	17400550	17400555	5
Deletion	Chr2	18782842	18782879	37
Deletion	Chr11	19795127	19795130	3	LOC_Os11g33454
Deletion	Chr9	20433560	20433561	1
Deletion	Chr3	22865538	22865539	1
Deletion	Chr3	23270994	23270996	2
Deletion	Chr6	25764375	25764376	1
Deletion	Chr3	26387211	26387224	13
Deletion	Chr2	31336745	31336780	35
Deletion	Chr2	31846649	31846664	15	LOC_Os02g52020
Deletion	Chr2	32425218	32425219	1
Deletion	Chr2	34541001	34541002	1
Deletion	Chr1	34925376	34925379	3	LOC_Os01g60380
Deletion	Chr1	38571602	38571620	18

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16890676	16890676	1
Insertion	Chr2	23336959	23336959	1
Insertion	Chr3	21360570	21360595	26
Insertion	Chr6	8619321	8619350	30	LOC_Os06g15210
Insertion	Chr8	6514991	6514991	1
Insertion	Chr8	7530426	7530426	1
Insertion	Chr10	186169	186170	2
Insertion	Chr10	2770857	2770857	1
Insertion	Chr10	8231803	8231803	1
Insertion	Chr12	15679839	15679839	1
Insertion	Chr12	16866528	16866531	4
Insertion	Chr12	24971710	24971710	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13507809	13558994

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1867356	Chr2	16127259
Translocation	Chr9	5979547	Chr2	18788610
Translocation	Chr7	6846435	Chr1	27664994
Translocation	Chr8	15633999	Chr4	3615666
Translocation	Chr11	19842339	Chr3	29848934
Translocation	Chr10	21683380	Chr5	26889343	LOC_Os05g46390
Translocation	Chr10	21683405	Chr5	26849359
Translocation	Chr7	28994733	Chr4	21354356	LOC_Os07g48460

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