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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16511097	C-G	HET	INTERGENIC
SBS	Chr10	12427593	A-G	HOMO	INTERGENIC
SBS	Chr10	21020806	C-T	HET	INTERGENIC
SBS	Chr11	21692241	C-A	HOMO	INTERGENIC
SBS	Chr12	1414535	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	1028752	G-C	HET	INTERGENIC
SBS	Chr2	2054745	A-G	HET	INTRON
SBS	Chr2	27088884	G-A	HOMO	INTERGENIC
SBS	Chr2	3945946	C-T	HET	INTERGENIC
SBS	Chr2	9133922	C-A	HOMO	INTERGENIC
SBS	Chr3	13345642	T-A	HET	INTRON
SBS	Chr3	13816384	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	17021421	A-G	HET	INTRON
SBS	Chr3	18622778	T-C	HET	INTERGENIC
SBS	Chr3	29339449	C-T	HOMO	INTERGENIC
SBS	Chr3	3480573	A-C	HOMO	INTRON
SBS	Chr4	5590542	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	9880631	G-A	HET	INTERGENIC
SBS	Chr5	20106525	G-T	HOMO	INTRON
SBS	Chr5	20106528	A-T	HOMO	INTRON
SBS	Chr5	29181221	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g50880
SBS	Chr5	29647884	G-A	HET	INTERGENIC
SBS	Chr5	3627603	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g06920
SBS	Chr5	7476907	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g13480
SBS	Chr6	13229449	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g22740
SBS	Chr6	13575171	G-A	HOMO	INTRON
SBS	Chr6	16044596	T-C	HOMO	INTERGENIC
SBS	Chr6	26238325	A-G	HOMO	INTERGENIC
SBS	Chr7	6535711	G-A	HET	INTERGENIC
SBS	Chr7	7853027	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13680
SBS	Chr8	12050349	A-C	HET	INTERGENIC
SBS	Chr8	3319887	A-G	HET	INTERGENIC
SBS	Chr8	9071655	T-A	HET	UTR_3_PRIME
SBS	Chr8	9090038	G-A	HET	INTERGENIC
SBS	Chr8	9611570	C-T	HET	INTERGENIC
SBS	Chr9	5706651	C-A	HOMO	INTRON

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2650176	2650342	166
Deletion	Chr8	2861195	2861197	2
Deletion	Chr4	3210039	3210063	24
Deletion	Chr12	3898622	3898624	2
Deletion	Chr8	5415383	5415435	52
Deletion	Chr11	5447910	5447911	1	LOC_Os11g10090
Deletion	Chr7	7012063	7012064	1
Deletion	Chr6	10337836	10337837	1
Deletion	Chr4	10818290	10818291	1
Deletion	Chr11	12150216	12150247	31
Deletion	Chr8	12158178	12158179	1
Deletion	Chr4	13754369	13754370	1
Deletion	Chr4	14111089	14111090	1
Deletion	Chr4	15166736	15166738	2
Deletion	Chr6	16039524	16039533	9	LOC_Os06g28230
Deletion	Chr8	17554699	17554700	1
Deletion	Chr12	17823013	17823014	1
Deletion	Chr7	21549231	21549233	2
Deletion	Chr6	22855099	22855100	1
Deletion	Chr3	22906322	22906342	20
Deletion	Chr5	23041563	23041572	9
Deletion	Chr7	23466292	23466293	1
Deletion	Chr6	26711992	26711993	1
Deletion	Chr1	27463040	27463041	1
Deletion	Chr1	28807960	28807969	9
Deletion	Chr4	33370205	33370212	7
Deletion	Chr3	33522470	33522486	16
Deletion	Chr1	34345889	34345891	2
Deletion	Chr1	36615159	36615161	2
Deletion	Chr1	42385063	42385065	2

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	16895894	16895894	1
Insertion	Chr1	21103425	21103432	8
Insertion	Chr10	12528896	12528896	1
Insertion	Chr10	19335773	19335774	2
Insertion	Chr10	6984004	6984004	1
Insertion	Chr11	27074008	27074008	1
Insertion	Chr12	9672312	9672313	2
Insertion	Chr2	13691593	13691593	1
Insertion	Chr2	4815705	4815705	1
Insertion	Chr3	13515384	13515384	1
Insertion	Chr3	23333074	23333074	1
Insertion	Chr5	29117705	29117708	4
Insertion	Chr6	9741689	9741689	1
Insertion	Chr9	14181446	14181446	1
Insertion	Chr9	94325	94325	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4703392	5070577	LOC_Os08g08220
Inversion	Chr8	4703395	5070580	LOC_Os08g08220
Inversion	Chr6	14224981	14226227	LOC_Os06g24310
Inversion	Chr6	14224996	14226230	LOC_Os06g24310

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2610998	Chr1	16147165
Translocation	Chr11	7536128	Chr6	4131691
Translocation	Chr9	8487771	Chr6	18348286	LOC_Os06g31550
Translocation	Chr10	12388291	Chr1	18490297
Translocation	Chr2	12921373	Chr1	33032305
Translocation	Chr6	15501698	Chr1	16931496
Translocation	Chr6	16073303	Chr5	1070147
Translocation	Chr4	20213225	Chr1	11799477	LOC_Os04g33370
Translocation	Chr7	23011906	Chr4	31785700
Translocation	Chr11	27311127	Chr1	20757377
Translocation	Chr11	27794146	Chr5	23586766	LOC_Os11g45930
Translocation	Chr3	35243884	Chr1	35138887	LOC_Os03g62220

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