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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27642831	G-T	HET	INTERGENIC
SBS	Chr2	20773306	G-C	HET	INTERGENIC
SBS	Chr2	23424803	C-T	HET	INTERGENIC
SBS	Chr2	24186189	A-T	HET	INTERGENIC
SBS	Chr2	27893181	G-A	HET	INTRON
SBS	Chr3	3663208	T-C	HET	INTERGENIC
SBS	Chr3	31555748	T-C	HOMO	INTRON
SBS	Chr4	19757052	G-A	HET	INTERGENIC
SBS	Chr4	20982540	T-C	HET	INTERGENIC
SBS	Chr4	32282428	T-C	HET	INTERGENIC
SBS	Chr5	292502	T-C	HOMO	INTRON
SBS	Chr5	17137151	C-T	HOMO	INTERGENIC
SBS	Chr6	10116894	A-G	HOMO	INTERGENIC
SBS	Chr6	14513289	G-T	HET	INTERGENIC
SBS	Chr6	16668108	G-T	HET	INTERGENIC
SBS	Chr6	26609728	C-T	HET	INTRON
SBS	Chr7	8040498	T-A	HET	INTRON
SBS	Chr8	12201826	C-T	HET	INTERGENIC
SBS	Chr8	13020442	A-T	HOMO	INTERGENIC
SBS	Chr8	13020446	A-G	HOMO	INTERGENIC
SBS	Chr8	21465626	G-T	HET	INTERGENIC
SBS	Chr9	4143138	A-C	HET	INTERGENIC
SBS	Chr9	14031770	A-G	HET	INTERGENIC
SBS	Chr9	16614711	T-C	HET	INTERGENIC
SBS	Chr9	18506589	T-C	HET	INTERGENIC
SBS	Chr9	20303939	A-G	HOMO	INTERGENIC
SBS	Chr9	20303941	C-T	HOMO	INTERGENIC
SBS	Chr9	20303942	C-T	HOMO	INTERGENIC
SBS	Chr10	1505819	T-G	HET	INTERGENIC
SBS	Chr10	17599740	T-A	HOMO	INTERGENIC
SBS	Chr11	8238788	T-G	HOMO	INTERGENIC
SBS	Chr11	20120942	C-G	HET	INTRON
SBS	Chr11	24937868	G-A	HET	INTRON
SBS	Chr11	25978065	T-G	HET	INTRON
SBS	Chr12	1125437	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g03010
SBS	Chr12	13916899	G-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	555489	555795	306
Deletion	Chr12	2269355	2269364	9
Deletion	Chr8	2693342	2693344	2
Deletion	Chr6	5132678	5132679	1
Deletion	Chr1	5418663	5418664	1
Deletion	Chr9	5809344	5809346	2
Deletion	Chr12	10412683	10412688	5
Deletion	Chr6	12222124	12222125	1
Deletion	Chr8	13018664	13018672	8
Deletion	Chr5	13129013	13129017	4	LOC_Os05g23020
Deletion	Chr11	13208459	13208462	3
Deletion	Chr2	16276460	16276461	1
Deletion	Chr10	16527697	16527702	5
Deletion	Chr11	16953722	16953762	40
Deletion	Chr6	17084368	17084419	51	LOC_Os06g29750
Deletion	Chr11	17194290	17194292	2
Deletion	Chr11	17664140	17664141	1	LOC_Os11g30390
Deletion	Chr8	17878185	17878188	3
Deletion	Chr3	18006316	18006318	2	LOC_Os03g31560
Deletion	Chr6	25639660	25639661	1
Deletion	Chr5	25870740	25870741	1
Deletion	Chr6	29260603	29260604	1
Deletion	Chr1	36896666	36896672	6

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	29396167	29396169	3
Insertion	Chr10	21864210	21864211	2
Insertion	Chr2	9009054	9009062	9
Insertion	Chr2	17919273	17919273	1
Insertion	Chr3	179069	179084	16
Insertion	Chr3	23141900	23141905	6
Insertion	Chr4	14911497	14911560	64
Insertion	Chr7	16468844	16468846	3	LOC_Os07g28200
Insertion	Chr8	6988769	6988771	3	LOC_Os08g11920
Insertion	Chr8	13040413	13040416	4
Insertion	Chr9	4874891	4874891	1
Insertion	Chr10	10201071	10201071	1
Insertion	Chr10	19448366	19448366	1
Insertion	Chr12	22798936	22798965	30

No Inversion

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1087019	Chr5	19541024
Translocation	Chr10	7047389	Chr1	36582410
Translocation	Chr3	9557729	Chr2	35079536	LOC_Os03g17180
Translocation	Chr3	9560198	Chr2	35079544
Translocation	Chr10	11760185	Chr2	4884740
Translocation	Chr7	14493871	Chr1	41351273
Translocation	Chr12	16959286	Chr8	6751598
Translocation	Chr4	19596923	Chr2	8070000
Translocation	Chr11	20629447	Chr8	14819674
Translocation	Chr11	24572965	Chr5	19540894

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