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Mutant Information

Mutant NameFN3217-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3217-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 40
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr123752177G-AHETINTERGENIC
SBSChr137885725G-THETINTERGENIC
SBSChr13905569T-AHOMOSYNONYMOUS_CODING
SBSChr18104656A-GHOMOINTERGENIC
SBSChr19999817A-GHETNON_SYNONYMOUS_CODINGLOC_Os01g17370
SBSChr1011432976C-THETINTERGENIC
SBSChr1015896899C-THETINTRON
SBSChr106983727T-GHETINTRON
SBSChr107258478A-GHETINTRON
SBSChr1114020203C-AHETNON_SYNONYMOUS_CODINGLOC_Os11g24560
SBSChr116404746C-THOMOINTERGENIC
SBSChr118645212C-AHOMOINTERGENIC
SBSChr1226543827C-THETNON_SYNONYMOUS_CODINGLOC_Os12g42720
SBSChr1226669953C-THETNON_SYNONYMOUS_CODINGLOC_Os12g42910
SBSChr229819616C-THETINTERGENIC
SBSChr230693157C-THETINTRON
SBSChr231647530T-GHETINTERGENIC
SBSChr24382654C-THETINTERGENIC
SBSChr27882705G-THETNON_SYNONYMOUS_CODINGLOC_Os02g14370
SBSChr312211175C-THETNON_SYNONYMOUS_CODINGLOC_Os03g21350
SBSChr314159388C-AHETINTERGENIC
SBSChr317028548T-CHETSYNONYMOUS_CODING
SBSChr317052951G-AHETINTERGENIC
SBSChr324835372G-AHOMOINTERGENIC
SBSChr335116275G-AHOMOSYNONYMOUS_CODING
SBSChr35718479C-THETINTERGENIC
SBSChr35718480G-THETINTERGENIC
SBSChr35718481A-THETINTERGENIC
SBSChr39830125C-THETINTERGENIC
SBSChr41230336G-THETINTRON
SBSChr4482275C-THETINTERGENIC
SBSChr524380692C-THETNON_SYNONYMOUS_CODINGLOC_Os05g41640
SBSChr620641101C-THETINTERGENIC
SBSChr721372188G-AHETINTRON
SBSChr76218672A-GHETINTERGENIC
SBSChr77977557G-CHETINTERGENIC
SBSChr816529890C-AHETINTRON
SBSChr826773666T-AHETINTERGENIC
SBSChr8458364C-THETINTERGENIC
SBSChr99182551G-AHETNON_SYNONYMOUS_CODINGLOC_Os09g15130

Deletions: 21
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr73930731393074211
DeletionChr2407430040743011LOC_Os02g07780
DeletionChr2458885145888521
DeletionChr64825115482514429
DeletionChr1552744455274451
DeletionChr9712588571258861
DeletionChr810016076100160771
DeletionChr1210664031106640343
DeletionChr10119091601190917313
DeletionChr312911001129210009999
DeletionChr518380812183808131LOC_Os05g31570
DeletionChr1223358603233586074
DeletionChr524379609243796101LOC_Os05g41640
DeletionChr324587894245878973
DeletionChr1226843549268435523
DeletionChr6277491382774915113
DeletionChr7283880772838810831
DeletionChr129540473295404752
DeletionChr7296782072967821710
DeletionChr332781032327810408
DeletionChr433125496331254993

Insertions: 11
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr119654208196542081
InsertionChr10698409469840952
InsertionChr1223699351236993588
InsertionChr2297646452976472278
InsertionChr3962221796222171
InsertionChr425995558259955581
InsertionChr51699041699096
InsertionChr723025757230257571
InsertionChr826620581266205822
InsertionChr95950870595090132
InsertionChr9631168863116914

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr11318956913460356
InversionChr11318957113460362

Translocations: 8
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr11769708Chr311386189
TranslocationChr102434259Chr434198565
TranslocationChr53827519Chr312921164
TranslocationChr53841811Chr312910926LOC_Os05g07260
TranslocationChr710511793Chr119823229
TranslocationChr812580177Chr727346312
TranslocationChr1016638143Chr227025135LOC_Os02g44599
TranslocationChr1119735829Chr917966312