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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9084109	C-T	HET	INTERGENIC
SBS	Chr1	17540767	C-T	HET	INTRON
SBS	Chr1	34827487	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60220
SBS	Chr1	35246223	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60930
SBS	Chr2	13087512	T-A	HET	INTERGENIC
SBS	Chr2	13087514	T-A	HET	INTERGENIC
SBS	Chr2	14862258	C-T	HET	INTERGENIC
SBS	Chr3	391685	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g01630
SBS	Chr3	16904862	G-A	HOMO	INTRON
SBS	Chr3	17954274	G-T	HOMO	INTERGENIC
SBS	Chr3	22119698	G-A	HET	INTERGENIC
SBS	Chr3	28622005	C-A	HET	SYNONYMOUS_CODING
SBS	Chr5	17164180	C-G	HET	INTERGENIC
SBS	Chr5	28126708	C-T	HET	INTRON
SBS	Chr6	21021718	G-A	HET	INTERGENIC
SBS	Chr6	24377401	G-A	HET	INTERGENIC
SBS	Chr7	7920448	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g13830
SBS	Chr7	9953371	G-C	HOMO	INTERGENIC
SBS	Chr7	18141606	G-A	HET	INTRON
SBS	Chr7	21835145	T-C	HOMO	INTERGENIC
SBS	Chr7	21948423	C-T	HOMO	STOP_GAINED	LOC_Os07g36670
SBS	Chr8	11996519	G-A	HET	INTERGENIC
SBS	Chr8	18325386	A-G	HET	INTRON
SBS	Chr8	19835154	T-A	HET	INTRON
SBS	Chr8	27494219	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	27746761	C-T	HOMO	INTERGENIC
SBS	Chr9	3810655	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07600
SBS	Chr9	10404865	A-G	HET	INTRON
SBS	Chr9	22517545	T-C	HET	INTERGENIC
SBS	Chr10	6496750	G-C	HET	INTERGENIC
SBS	Chr10	7221449	G-A	HET	INTRON
SBS	Chr10	8524129	A-C	HET	INTERGENIC
SBS	Chr11	1148393	A-T	HOMO	INTERGENIC
SBS	Chr11	10344046	G-A	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	657432	657434	2
Deletion	Chr1	765208	765214	6
Deletion	Chr12	3831917	3831923	6
Deletion	Chr4	5050966	5050967	1
Deletion	Chr11	5450951	5450953	2
Deletion	Chr2	5840482	5840493	11
Deletion	Chr9	6805404	6805410	6
Deletion	Chr7	7176753	7176756	3
Deletion	Chr5	10863274	10863284	10	LOC_Os05g18740
Deletion	Chr1	12528708	12528709	1
Deletion	Chr2	14754001	14802000	47999	9
Deletion	Chr1	16418044	16418045	1
Deletion	Chr3	16888120	16888121	1
Deletion	Chr8	18878724	18878731	7
Deletion	Chr1	18903548	18903555	7	LOC_Os01g34290
Deletion	Chr11	19052512	19052514	2
Deletion	Chr7	20054916	20054917	1
Deletion	Chr8	21321596	21321605	9
Deletion	Chr1	21800462	21800463	1
Deletion	Chr11	26082726	26082736	10
Deletion	Chr8	27591241	27591259	18
Deletion	Chr4	31164146	31164148	2
Deletion	Chr4	32797799	32797816	17	LOC_Os04g55170

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	345410	345412	3
Insertion	Chr10	13742558	13742559	2
Insertion	Chr5	1322665	1322668	4
Insertion	Chr5	16436976	16436994	19
Insertion	Chr6	10823902	10823907	6
Insertion	Chr12	9616791	9616791	1	LOC_Os12g16780

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	13076701	13135080	LOC_Os02g22080
Inversion	Chr2	13910500	13916298	2
Inversion	Chr2	13910504	13916311	2
Inversion	Chr10	14406084	14465381	LOC_Os10g27300
Inversion	Chr10	14406096	14465385	LOC_Os10g27300

No Translocation

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