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Mutant Information

Mutant Name	FN3219-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3219-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3608290	A-G	HET	INTERGENIC
SBS	Chr1	3951099	T-A	HET	INTERGENIC
SBS	Chr1	7976644	C-A	HET	INTERGENIC
SBS	Chr1	16268661	T-C	HOMO	INTERGENIC
SBS	Chr1	16716751	A-T	HET	UTR_5_PRIME
SBS	Chr1	37747254	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g65030
SBS	Chr2	10946078	T-A	HET	INTRON
SBS	Chr2	15681313	C-T	HET	INTERGENIC
SBS	Chr2	34305465	C-T	HET	INTRON
SBS	Chr2	35512140	G-A	HET	INTERGENIC
SBS	Chr3	8340131	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15250
SBS	Chr3	8343466	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15250
SBS	Chr3	25901518	T-C	HOMO	INTERGENIC
SBS	Chr3	28622379	G-A	HET	INTRON
SBS	Chr3	32364484	C-T	HOMO	INTERGENIC
SBS	Chr4	3646858	G-A	HET	INTERGENIC
SBS	Chr4	15949793	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g26970
SBS	Chr4	29714098	T-C	HET	INTERGENIC
SBS	Chr4	31581821	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	5969576	A-T	HET	INTERGENIC
SBS	Chr5	5971003	T-C	HET	INTERGENIC
SBS	Chr5	25076536	G-A	HET	INTERGENIC
SBS	Chr6	2617627	C-T	HET	INTRON
SBS	Chr7	6485052	C-G	HET	INTERGENIC
SBS	Chr7	14900021	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25960
SBS	Chr7	14900022	G-T	HET	SYNONYMOUS_CODING
SBS	Chr7	14900023	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25960
SBS	Chr7	19127594	T-C	HET	INTERGENIC
SBS	Chr7	19457103	A-G	HET	INTERGENIC
SBS	Chr7	21286042	C-T	HET	INTERGENIC
SBS	Chr7	28093270	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr7	28723643	G-A	HET	INTERGENIC
SBS	Chr8	1595504	G-A	HET	INTERGENIC
SBS	Chr8	13246755	A-G	HET	INTERGENIC
SBS	Chr8	15896008	C-T	HOMO	INTERGENIC
SBS	Chr8	20721746	A-G	HET	INTRON
SBS	Chr9	10769552	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	17798062	G-A	HET	INTERGENIC
SBS	Chr10	18941317	C-T	HOMO	UTR_3_PRIME
SBS	Chr11	13479303	T-C	HET	INTRON
SBS	Chr11	24819626	C-A	HOMO	INTERGENIC
SBS	Chr12	1898014	C-T	HOMO	INTRON
SBS	Chr12	4424841	G-A	HET	INTERGENIC
SBS	Chr12	23024144	A-G	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1041001	1153000	111999	13
Deletion	Chr4	1472629	1472630	1
Deletion	Chr7	3683001	3750000	66999	17
Deletion	Chr3	4984424	4984425	1
Deletion	Chr8	6264536	6264551	15
Deletion	Chr12	8316001	8326000	9999	LOC_Os12g16530
Deletion	Chr6	9180358	9180364	6
Deletion	Chr11	9626681	9626687	6
Deletion	Chr2	10049419	10049421	2
Deletion	Chr5	10649001	10670000	20999	2
Deletion	Chr5	11562686	11562717	31
Deletion	Chr4	13572220	13572221	1
Deletion	Chr3	17360896	17360919	23
Deletion	Chr7	18932001	19084000	151999	23
Deletion	Chr8	19282080	19282081	1
Deletion	Chr12	24273001	24511000	237999	25
Deletion	Chr12	24404957	24404958	1
Deletion	Chr4	25237781	25237782	1
Deletion	Chr11	25723965	25723966	1
Deletion	Chr1	33614187	33614193	6	LOC_Os01g58114
Deletion	Chr1	41394541	41394542	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	987222	987233	12
Insertion	Chr10	15621383	15621384	2
Insertion	Chr5	2145586	2145591	6
Insertion	Chr5	25436725	25436725	1
Insertion	Chr6	29336028	29336065	38	LOC_Os06g48490
Insertion	Chr8	12104566	12104585	20
Insertion	Chr10	912536	912536	1
Insertion	Chr10	17998445	17998462	18
Insertion	Chr11	18703647	18703648	2

Inversions: 11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1429766	1429911
Inversion	Chr11	7774137	7774334
Inversion	Chr4	14066032	14066179
Inversion	Chr8	14369782	14370043
Inversion	Chr8	16831953	16838329
Inversion	Chr8	16831956	16838358
Inversion	Chr12	23073068	23073237	LOC_Os12g37580
Inversion	Chr12	23688061	23688349	LOC_Os12g38570
Inversion	Chr1	30700285	31015377
Inversion	Chr1	30700298	31015381
Inversion	Chr3	34733801	34734136	LOC_Os03g61150

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	3055859	Chr3	34057198	2
Translocation	Chr12	8325719	Chr6	1390531	LOC_Os06g03600
Translocation	Chr12	8327164	Chr6	1390516	LOC_Os06g03600
Translocation	Chr10	8620594	Chr1	12471949
Translocation	Chr7	24086512	Chr6	22803769
Translocation	Chr12	24393553	Chr6	19207692
Translocation	Chr8	27530336	Chr1	23901721	LOC_Os08g43530

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