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Mutant Information

Mutant Name	FN3221-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3221-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16905075	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g30956
SBS	Chr1	26224148	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	30043430	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	33984316	G-A	HET	INTERGENIC
SBS	Chr1	41282843	C-T	HOMO	INTERGENIC
SBS	Chr10	13127226	G-A	HOMO	INTRON
SBS	Chr10	13693169	C-T	HET	INTERGENIC
SBS	Chr10	14255434	G-A	HET	INTERGENIC
SBS	Chr10	1493385	T-A	HOMO	INTERGENIC
SBS	Chr10	7651429	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g14060
SBS	Chr10	9639907	T-G	HOMO	INTERGENIC
SBS	Chr11	24871543	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	10987764	G-T	HET	INTRON
SBS	Chr12	11505919	G-A	HET	INTERGENIC
SBS	Chr12	15827519	A-C	HET	INTERGENIC
SBS	Chr12	17093428	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28920
SBS	Chr12	20180525	C-A	HET	SYNONYMOUS_CODING
SBS	Chr3	11145763	C-T	HET	INTERGENIC
SBS	Chr3	14621758	G-A	HET	INTERGENIC
SBS	Chr3	23673071	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g42540
SBS	Chr3	25517655	A-C	HET	INTERGENIC
SBS	Chr3	25577455	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	29874538	G-C	HET	INTRON
SBS	Chr3	29902177	A-C	HET	INTRON
SBS	Chr3	3059637	C-T	HOMO	INTERGENIC
SBS	Chr3	35160076	G-A	HET	INTERGENIC
SBS	Chr3	5665987	A-G	HOMO	INTERGENIC
SBS	Chr4	10714755	C-T	HET	INTERGENIC
SBS	Chr4	31009145	G-A	HET	INTRON
SBS	Chr4	32427590	G-A	HET	INTERGENIC
SBS	Chr4	7271076	A-T	HET	INTRON
SBS	Chr5	13040392	T-C	HET	INTRON
SBS	Chr5	25245731	T-A	HET	INTERGENIC
SBS	Chr5	25525719	A-T	HOMO	INTERGENIC
SBS	Chr5	25835397	C-A	HOMO	INTERGENIC
SBS	Chr6	11956148	T-G	HET	INTRON
SBS	Chr6	22192620	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	29165227	T-G	HOMO	INTRON
SBS	Chr6	3077381	G-C	HET	INTRON
SBS	Chr7	23025543	G-A	HET	INTERGENIC
SBS	Chr7	2514793	G-A	HET	INTERGENIC
SBS	Chr7	27276651	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	9247934	C-T	HOMO	INTERGENIC
SBS	Chr8	10852320	G-A	HOMO	INTERGENIC
SBS	Chr8	18783316	A-T	HET	INTERGENIC
SBS	Chr8	18783317	A-T	HET	INTERGENIC
SBS	Chr8	2316747	C-T	HET	INTERGENIC
SBS	Chr8	4140038	A-T	HET	INTRON
SBS	Chr8	4140041	T-C	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	926274	926291	17
Deletion	Chr7	2099830	2099834	4
Deletion	Chr7	6082689	6082781	92
Deletion	Chr11	7700797	7700799	2
Deletion	Chr4	9493146	9493148	2
Deletion	Chr2	9610500	9610506	6
Deletion	Chr6	12006873	12006889	16
Deletion	Chr8	13818626	13818633	7
Deletion	Chr4	14891750	14891751	1
Deletion	Chr5	15552001	15615000	62999	8
Deletion	Chr4	16204951	16204956	5
Deletion	Chr1	18477918	18477936	18
Deletion	Chr2	20743416	20743417	1
Deletion	Chr7	22603298	22603299	1
Deletion	Chr4	24853582	24853597	15
Deletion	Chr5	25466917	25466918	1
Deletion	Chr7	27759503	27759504	1
Deletion	Chr3	29018335	29018338	3	LOC_Os03g50810
Deletion	Chr1	30668094	30668106	12	LOC_Os01g53370
Deletion	Chr2	32191001	32198000	6999	2
Deletion	Chr4	34447462	34447463	1
Deletion	Chr1	40653094	40653102	8

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	17096932	17096932	1	LOC_Os12g28920
Insertion	Chr2	2106504	2106505	2
Insertion	Chr2	27827307	27827350	44
Insertion	Chr3	36205284	36205286	3
Insertion	Chr3	7907665	7907666	2
Insertion	Chr4	31644812	31644812	1
Insertion	Chr6	18639219	18639219	1
Insertion	Chr7	24850981	24851043	63
Insertion	Chr8	22256365	22256365	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4603632	4632230
Inversion	Chr3	4603635	4632232
Inversion	Chr1	16207692	16640442	LOC_Os01g28930
Inversion	Chr1	16207704	16640448	LOC_Os01g28930
Inversion	Chr5	25571137	25571486
Inversion	Chr1	28128354	28266668
Inversion	Chr1	28128357	28266679

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10912548	Chr5	5898812
Translocation	Chr9	10912878	Chr5	15553704	LOC_Os05g26810
Translocation	Chr9	10912891	Chr5	15213734
Translocation	Chr3	15238103	Chr2	3401798
Translocation	Chr7	19913844	Chr4	22060737	LOC_Os04g36570
Translocation	Chr7	19914517	Chr4	22060746	2

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