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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14371578	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	21881050	C-T	HET	INTRON
SBS	Chr1	32568177	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	11007445	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g21490
SBS	Chr11	13667642	G-A	HET	INTERGENIC
SBS	Chr11	14491803	G-A	HET	INTERGENIC
SBS	Chr11	15827296	C-T	HET	INTERGENIC
SBS	Chr12	14974726	T-A	HET	INTERGENIC
SBS	Chr12	15790017	G-C	HET	INTERGENIC
SBS	Chr12	20732103	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g34200
SBS	Chr12	22550206	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36780
SBS	Chr12	23130077	A-C	HET	INTERGENIC
SBS	Chr12	26666147	A-T	HET	INTERGENIC
SBS	Chr12	9402093	A-T	HET	INTERGENIC
SBS	Chr2	15245889	G-A	HET	INTRON
SBS	Chr2	16294121	C-T	HET	INTRON
SBS	Chr2	1673299	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g03940
SBS	Chr2	7073843	G-A	HET	INTERGENIC
SBS	Chr4	34499168	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	19612423	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g33390
SBS	Chr6	10955644	G-A	HET	INTERGENIC
SBS	Chr6	22635786	G-A	HET	INTERGENIC
SBS	Chr7	13248267	C-T	HOMO	INTERGENIC
SBS	Chr7	14221291	C-T	HOMO	INTERGENIC
SBS	Chr7	5755682	C-T	HET	INTRON
SBS	Chr7	6210212	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11260
SBS	Chr8	16104393	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g26430
SBS	Chr8	19475034	C-T	HOMO	INTERGENIC
SBS	Chr8	366206	A-T	HOMO	INTRON
SBS	Chr8	4755255	G-A	HET	INTERGENIC
SBS	Chr9	17894609	C-T	HET	INTRON
SBS	Chr9	18554450	G-A	HET	INTERGENIC
SBS	Chr9	19012395	G-A	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	157779	157809	30	LOC_Os01g01320
Deletion	Chr7	2154992	2155009	17
Deletion	Chr2	2604297	2604298	1
Deletion	Chr11	4527909	4527910	1
Deletion	Chr3	5197126	5197127	1
Deletion	Chr7	6283230	6283232	2
Deletion	Chr5	6371577	6371579	2
Deletion	Chr8	6973838	6973839	1
Deletion	Chr5	8134150	8134161	11	LOC_Os05g14420
Deletion	Chr7	8953033	8953035	2
Deletion	Chr6	10755062	10755063	1
Deletion	Chr2	13432504	13432507	3
Deletion	Chr3	15426830	15426831	1
Deletion	Chr1	15553571	15553594	23
Deletion	Chr3	15793848	15793849	1
Deletion	Chr9	16799034	16799046	12
Deletion	Chr11	18081494	18081495	1
Deletion	Chr6	18637639	18637640	1
Deletion	Chr6	18870148	18870149	1	LOC_Os06g32450
Deletion	Chr4	19593521	19593527	6	LOC_Os04g32540
Deletion	Chr11	21013962	21013963	1	LOC_Os11g35800
Deletion	Chr3	22820351	22820357	6
Deletion	Chr5	28886672	28886673	1
Deletion	Chr6	30632753	30632754	1
Deletion	Chr1	38427405	38427406	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	158016	158016	1	LOC_Os01g01320
Insertion	Chr10	15203369	15203370	2
Insertion	Chr12	13318573	13318573	1
Insertion	Chr12	16949077	16949077	1
Insertion	Chr2	13029347	13029347	1
Insertion	Chr4	30507134	30507137	4
Insertion	Chr5	5890607	5890607	1
Insertion	Chr6	25066084	25066084	1
Insertion	Chr8	2994270	2994271	2
Insertion	Chr8	7844749	7844749	1
Insertion	Chr9	14182830	14182831	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	8908912	8909125	LOC_Os10g17630
Inversion	Chr11	13247278	13445197	LOC_Os11g23770
Inversion	Chr11	13247288	13445271	LOC_Os11g23770
Inversion	Chr2	17156429	17156627	LOC_Os02g28980

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2005847	Chr2	19680995
Translocation	Chr5	3174844	Chr2	13584625
Translocation	Chr11	4845284	Chr4	30958425
Translocation	Chr5	5212055	Chr1	26217213
Translocation	Chr11	5267295	Chr5	13676750
Translocation	Chr12	10883302	Chr2	25322026
Translocation	Chr12	12183087	Chr2	9649794
Translocation	Chr12	19211759	Chr2	10855496	LOC_Os02g18620
Translocation	Chr11	19842605	Chr1	19348949
Translocation	Chr8	26299548	Chr2	25044491

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