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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22675380	T-A	HET	INTERGENIC
SBS	Chr1	4201092	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	4391462	C-A	HET	INTRON
SBS	Chr1	7112249	T-C	HET	INTERGENIC
SBS	Chr1	7515519	A-G	HET	INTERGENIC
SBS	Chr1	8352482	C-A	HET	INTERGENIC
SBS	Chr10	8430439	G-A	HET	INTERGENIC
SBS	Chr11	12598292	G-A	HET	INTRON
SBS	Chr11	26392009	T-C	HET	INTERGENIC
SBS	Chr11	636511	T-A	HET	INTERGENIC
SBS	Chr12	21913586	A-G	HET	INTERGENIC
SBS	Chr12	3743507	C-T	HET	INTERGENIC
SBS	Chr2	21578376	C-G	HOMO	INTERGENIC
SBS	Chr2	24666299	T-C	HET	INTERGENIC
SBS	Chr2	653470	C-A	HOMO	INTERGENIC
SBS	Chr3	13009164	A-T	HET	INTERGENIC
SBS	Chr3	26936911	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47590
SBS	Chr4	31431454	A-C	HET	INTERGENIC
SBS	Chr6	24137292	G-A	HOMO	INTERGENIC
SBS	Chr6	28539059	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g47070
SBS	Chr6	8268739	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	1171037	C-T	HOMO	INTERGENIC
SBS	Chr7	18344261	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	21656133	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36230
SBS	Chr7	25677377	T-A	HOMO	INTERGENIC
SBS	Chr8	13558381	G-C	HET	INTERGENIC
SBS	Chr8	23698274	G-A	HOMO	INTERGENIC
SBS	Chr8	25683860	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g40570
SBS	Chr9	12553619	A-G	HET	INTERGENIC
SBS	Chr9	16020130	A-T	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	5032981	5032982	1
Deletion	Chr9	6122245	6122248	3
Deletion	Chr2	7392410	7392412	2
Deletion	Chr11	7843612	7843613	1	LOC_Os11g14090
Deletion	Chr7	8030045	8030047	2
Deletion	Chr7	9576891	9576892	1
Deletion	Chr8	10547302	10547303	1
Deletion	Chr12	13965704	13965705	1
Deletion	Chr5	15367859	15367860	1
Deletion	Chr10	15441936	15441937	1
Deletion	Chr2	19468327	19468331	4	LOC_Os02g32780
Deletion	Chr8	22852405	22852406	1
Deletion	Chr5	26773023	26773038	15	LOC_Os05g46160
Deletion	Chr12	26973331	26973401	70	LOC_Os12g43480
Deletion	Chr1	27436600	27436601	1
Deletion	Chr2	33529005	33529006	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20424445	20424446	2
Insertion	Chr6	30884956	30884957	2
Insertion	Chr7	15466099	15466099	1
Insertion	Chr8	17910649	17910660	12

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3150491	3457300	LOC_Os02g06840
Inversion	Chr2	3150497	3457306	LOC_Os02g06840
Inversion	Chr12	25626078	26502953	2
Inversion	Chr12	25626080	26502955	2
Inversion	Chr6	31125283	31125459

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5943521	Chr3	31605370	LOC_Os03g55540
Translocation	Chr6	6005372	Chr4	17919422
Translocation	Chr8	8133543	Chr1	1378687
Translocation	Chr12	11862700	Chr4	22897697	LOC_Os12g20310
Translocation	Chr4	17881022	Chr1	36090932
Translocation	Chr5	19193609	Chr4	11717641
Translocation	Chr7	24585279	Chr4	34119127
Translocation	Chr7	24585651	Chr4	34119114
Translocation	Chr4	34006449	Chr3	18216937

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