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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1906402	A-C	HET	INTERGENIC
SBS	Chr1	30666817	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g53370
SBS	Chr10	19564731	A-G	HET	INTERGENIC
SBS	Chr10	3064940	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g06030
SBS	Chr11	15028448	C-T	HET	INTERGENIC
SBS	Chr11	15882963	G-C	HOMO	INTERGENIC
SBS	Chr11	21132182	C-T	HET	INTERGENIC
SBS	Chr11	5387063	C-T	HET	INTERGENIC
SBS	Chr12	11875546	C-T	HOMO	INTERGENIC
SBS	Chr12	26428094	G-A	HOMO	INTRON
SBS	Chr12	3140797	A-T	HOMO	INTERGENIC
SBS	Chr2	12647073	G-C	HET	SYNONYMOUS_CODING
SBS	Chr2	35278849	A-G	HOMO	INTERGENIC
SBS	Chr2	3560791	T-C	HOMO	INTERGENIC
SBS	Chr3	1018875	G-C	HET	INTRON
SBS	Chr3	7251319	A-T	HOMO	INTERGENIC
SBS	Chr4	12862478	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22690
SBS	Chr4	15212919	C-G	HET	INTRON
SBS	Chr4	9657809	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17640
SBS	Chr5	10776503	T-G	HET	INTRON
SBS	Chr5	16564419	T-A	HET	INTERGENIC
SBS	Chr5	20516812	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g34600
SBS	Chr5	28155595	T-C	HET	INTRON
SBS	Chr5	28594647	T-A	HET	INTERGENIC
SBS	Chr5	8289515	C-T	HET	INTERGENIC
SBS	Chr5	9221214	G-A	HET	INTRON
SBS	Chr6	10378122	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g17880
SBS	Chr6	12973705	T-C	HET	INTERGENIC
SBS	Chr6	16904080	C-A	HET	INTERGENIC
SBS	Chr6	6784935	G-T	HET	INTERGENIC
SBS	Chr7	12102181	G-A	HET	INTERGENIC
SBS	Chr7	15010427	A-G	HET	INTERGENIC
SBS	Chr7	16166952	G-A	HET	INTERGENIC
SBS	Chr7	16166957	C-A	HET	INTERGENIC
SBS	Chr7	19530881	T-C	HET	INTERGENIC
SBS	Chr7	28508474	G-T	HET	INTERGENIC
SBS	Chr7	28508475	A-T	HET	INTERGENIC
SBS	Chr7	9371450	G-A	HET	INTRON
SBS	Chr8	20902442	A-G	HOMO	INTRON
SBS	Chr9	3501268	T-C	HOMO	INTRON
SBS	Chr9	836282	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	194579	194582	3
Deletion	Chr10	2646609	2646610	1
Deletion	Chr9	2835769	2835770	1
Deletion	Chr12	4407609	4407610	1
Deletion	Chr11	7920716	7920717	1
Deletion	Chr8	9528777	9528778	1
Deletion	Chr10	10128690	10128691	1
Deletion	Chr1	11884277	11884279	2
Deletion	Chr4	13252001	13296000	43999	6
Deletion	Chr9	13431388	13431396	8
Deletion	Chr5	15826728	15826729	1
Deletion	Chr6	15853422	15853434	12	LOC_Os06g27940
Deletion	Chr1	18359635	18359638	3	LOC_Os01g33324
Deletion	Chr11	18786678	18786685	7
Deletion	Chr11	19629376	19629385	9	LOC_Os11g33170
Deletion	Chr11	20200604	20200605	1
Deletion	Chr1	20352373	20352375	2
Deletion	Chr11	23768115	23768116	1	LOC_Os11g39870
Deletion	Chr6	26764325	26764326	1
Deletion	Chr11	27810238	27810239	1
Deletion	Chr1	28613305	28613307	2
Deletion	Chr2	31266368	31266370	2
Deletion	Chr3	34595815	34595822	7
Deletion	Chr1	39690288	39690289	1

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16269319	16269319	1
Insertion	Chr1	27819413	27819438	26
Insertion	Chr1	34932501	34932501	1
Insertion	Chr1	871582	871639	58
Insertion	Chr11	22688678	22688710	33
Insertion	Chr11	8175197	8175202	6
Insertion	Chr2	26793248	26793262	15
Insertion	Chr2	6757799	6757800	2
Insertion	Chr4	3491684	3491688	5	LOC_Os04g06630
Insertion	Chr5	24227394	24227413	20
Insertion	Chr7	8585877	8585877	1
Insertion	Chr8	7447113	7447113	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6291659	6747853
Inversion	Chr4	6291663	6747855
Inversion	Chr3	19055489	19348430	LOC_Os03g33870
Inversion	Chr3	19055500	19348440	LOC_Os03g33870
Inversion	Chr8	25364205	25365161

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8402035	Chr6	13377163
Translocation	Chr6	10457321	Chr1	34461752
Translocation	Chr6	10457347	Chr1	34526468	LOC_Os01g59680
Translocation	Chr12	18527485	Chr11	14827073
Translocation	Chr8	24077241	Chr4	20494294

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