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Mutant Information

Mutant Name	FN3228-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3228-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10016629	C-T	HET	INTERGENIC
SBS	Chr1	2999270	C-T	HOMO	INTERGENIC
SBS	Chr1	35459776	C-T	HET	INTERGENIC
SBS	Chr1	40679374	C-T	HET	INTERGENIC
SBS	Chr10	10946337	G-T	HET	INTRON
SBS	Chr10	9231320	C-A	HET	INTRON
SBS	Chr11	1205572	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	16020044	C-T	HET	INTERGENIC
SBS	Chr11	16205927	G-A	HET	UTR_5_PRIME
SBS	Chr11	20955601	C-T	HET	INTRON
SBS	Chr11	21372520	T-A	HOMO	INTERGENIC
SBS	Chr11	21372521	C-A	HOMO	INTERGENIC
SBS	Chr11	21372533	T-C	HOMO	INTERGENIC
SBS	Chr11	8265186	C-T	HET	INTERGENIC
SBS	Chr11	9903142	T-A	HET	INTERGENIC
SBS	Chr11	9903143	C-A	HET	INTERGENIC
SBS	Chr12	10034894	G-T	HET	INTERGENIC
SBS	Chr12	13705813	G-A	HET	INTRON
SBS	Chr12	17497073	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29450
SBS	Chr12	19477213	C-T	HET	INTRON
SBS	Chr12	2137239	A-G	HET	INTERGENIC
SBS	Chr2	16698134	T-C	HET	INTERGENIC
SBS	Chr2	26725779	T-C	HET	INTERGENIC
SBS	Chr2	4811690	G-A	HET	INTRON
SBS	Chr2	8075244	G-A	HET	INTERGENIC
SBS	Chr3	3337615	T-A	HET	INTERGENIC
SBS	Chr3	33879838	A-T	HOMO	INTERGENIC
SBS	Chr3	7782174	C-T	HET	INTERGENIC
SBS	Chr4	12767969	C-G	HET	INTERGENIC
SBS	Chr4	24572535	A-G	HET	INTERGENIC
SBS	Chr4	27967253	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g47100
SBS	Chr4	6012452	G-A	HET	INTERGENIC
SBS	Chr4	8716368	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16080
SBS	Chr5	10094283	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17570
SBS	Chr5	11964346	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	18876491	G-C	HOMO	INTERGENIC
SBS	Chr5	26461044	C-A	HET	INTERGENIC
SBS	Chr6	6684760	A-T	HET	INTRON
SBS	Chr6	7668628	T-A	HET	INTRON
SBS	Chr7	15136860	G-C	HET	SYNONYMOUS_CODING
SBS	Chr7	19213121	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g32310
SBS	Chr7	19345384	T-C	HET	INTERGENIC
SBS	Chr8	12347053	C-T	HET	INTERGENIC
SBS	Chr8	1805736	A-G	HET	INTERGENIC
SBS	Chr8	22283208	G-A	HOMO	INTERGENIC
SBS	Chr9	4781242	C-T	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1430159	1430163	4
Deletion	Chr2	2359559	2359560	1
Deletion	Chr12	4830377	4830379	2
Deletion	Chr8	6378823	6378824	1
Deletion	Chr7	7013246	7013256	10
Deletion	Chr3	7667855	7667856	1
Deletion	Chr3	8340303	8340379	76	LOC_Os03g15250
Deletion	Chr10	8355110	8355113	3	LOC_Os10g16770
Deletion	Chr1	8469463	8469483	20
Deletion	Chr6	8536355	8536356	1
Deletion	Chr8	10085791	10085799	8
Deletion	Chr1	10810839	10810840	1
Deletion	Chr3	13184999	13185011	12
Deletion	Chr5	14397987	14397995	8	LOC_Os05g24840
Deletion	Chr7	19395001	19415000	19999	3
Deletion	Chr6	19480050	19480051	1
Deletion	Chr11	20063236	20063238	2
Deletion	Chr1	20424456	20424462	6
Deletion	Chr6	22253964	22253965	1
Deletion	Chr7	23075001	23191000	115999	23
Deletion	Chr11	27072233	27072234	1
Deletion	Chr6	30381774	30381777	3

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20816568	20816569	2
Insertion	Chr12	17142796	17142796	1
Insertion	Chr4	10997482	10997482	1
Insertion	Chr4	9330033	9330083	51
Insertion	Chr5	11345328	11345328	1
Insertion	Chr6	8045661	8045661	1

No Inversion

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4603985	Chr1	12053283
Translocation	Chr8	4604015	Chr2	15824153	2
Translocation	Chr8	7339095	Chr7	23192091	LOC_Os08g12430
Translocation	Chr8	7339097	Chr1	12054429	LOC_Os08g12430
Translocation	Chr12	10448829	Chr7	25514893
Translocation	Chr2	13261358	Chr1	42763711
Translocation	Chr8	14590229	Chr3	9391830
Translocation	Chr12	15119303	Chr8	12191012
Translocation	Chr8	24322448	Chr4	7832127
Translocation	Chr8	24322462	Chr4	7831862

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