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Mutant Information

Mutant Name	FN323-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN323-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19134828	A-C	HOMO	INTERGENIC
SBS	Chr1	40130855	G-A	HOMO	INTRON
SBS	Chr1	4388658	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g08750
SBS	Chr10	19308511	C-T	HOMO	INTERGENIC
SBS	Chr12	17129527	A-C	HET	INTERGENIC
SBS	Chr2	12108727	T-C	HET	INTRON
SBS	Chr2	26056323	C-T	HET	INTERGENIC
SBS	Chr2	6269057	C-T	HET	UTR_3_PRIME
SBS	Chr3	1597127	C-A	HET	INTRON
SBS	Chr3	31279510	A-T	HOMO	INTERGENIC
SBS	Chr4	11570997	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20680
SBS	Chr4	18305340	C-T	HET	INTRON
SBS	Chr4	25222180	A-G	HET	INTERGENIC
SBS	Chr4	29670883	T-C	HET	INTRON
SBS	Chr5	14929504	C-T	HOMO	INTERGENIC
SBS	Chr5	16639162	G-A	HOMO	INTERGENIC
SBS	Chr5	27021176	G-A	HOMO	INTERGENIC
SBS	Chr5	28334330	G-A	HET	INTERGENIC
SBS	Chr5	7286143	A-G	HOMO	INTERGENIC
SBS	Chr6	27449888	C-A	HET	INTERGENIC
SBS	Chr6	6660754	C-G	HET	INTERGENIC
SBS	Chr7	6340779	T-A	HET	INTERGENIC
SBS	Chr8	10954610	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g17860
SBS	Chr8	15423326	G-A	HET	INTERGENIC
SBS	Chr8	16378278	T-C	HET	INTERGENIC
SBS	Chr8	18247621	T-A	HET	INTRON
SBS	Chr8	19479377	C-A	HET	INTERGENIC
SBS	Chr8	27322712	A-C	HET	INTERGENIC
SBS	Chr9	5328275	C-T	HET	INTRON

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1166760	1167479	719
Deletion	Chr1	1835104	1835105	1	LOC_Os01g04160
Deletion	Chr5	2177719	2177725	6	LOC_Os05g04630
Deletion	Chr7	3560164	3560165	1
Deletion	Chr7	7090485	7090489	4
Deletion	Chr5	7591577	7591594	17
Deletion	Chr12	7829272	7829283	11
Deletion	Chr12	7895367	7895369	2
Deletion	Chr4	9943898	9943904	6
Deletion	Chr10	11896292	11896307	15
Deletion	Chr6	17322538	17322547	9
Deletion	Chr7	18973969	18973970	1
Deletion	Chr8	23276981	23276987	6
Deletion	Chr5	25782312	25782316	4
Deletion	Chr4	29558918	29558923	5
Deletion	Chr1	32722579	32722580	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	15390276	15390276	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7061828	7432004	2
Inversion	Chr7	14297778	14336653	LOC_Os07g25100
Inversion	Chr5	14930091	15882362
Inversion	Chr5	15834801	15882360	LOC_Os05g27230

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1167455	Chr5	14930072

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