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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18759987	G-T	HET	INTERGENIC
SBS	Chr1	1940997	C-T	HOMO	INTERGENIC
SBS	Chr1	36712662	A-G	HET	INTRON
SBS	Chr1	9483824	G-T	HET	INTERGENIC
SBS	Chr10	11224	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01008
SBS	Chr10	8754303	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17370
SBS	Chr11	17054769	T-C	HET	INTRON
SBS	Chr11	19318021	T-A	HET	INTERGENIC
SBS	Chr11	9689265	T-A	HET	INTRON
SBS	Chr12	21842071	C-T	HET	INTERGENIC
SBS	Chr12	3886093	A-T	HET	INTRON
SBS	Chr12	5158275	A-T	HET	INTERGENIC
SBS	Chr2	20546189	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34340
SBS	Chr4	18085779	G-T	HET	INTERGENIC
SBS	Chr4	2223567	A-G	HET	INTRON
SBS	Chr4	28456674	G-A	HET	INTERGENIC
SBS	Chr4	33486124	A-T	HET	INTERGENIC
SBS	Chr5	9323084	G-A	HOMO	INTRON
SBS	Chr6	19928281	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g34220
SBS	Chr7	16928664	G-T	HET	INTERGENIC
SBS	Chr8	19170691	G-A	HOMO	INTERGENIC
SBS	Chr8	19298922	C-T	HOMO	INTERGENIC
SBS	Chr8	5670420	G-A	HOMO	INTERGENIC
SBS	Chr9	6798386	C-G	HOMO	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	565247	565248	1
Deletion	Chr8	792192	792206	14
Deletion	Chr1	839145	839146	1
Deletion	Chr7	1224707	1224715	8
Deletion	Chr4	2621797	2621799	2
Deletion	Chr8	2899829	2899830	1
Deletion	Chr8	5944135	5944136	1
Deletion	Chr9	6530706	6530707	1
Deletion	Chr12	6869292	6869314	22
Deletion	Chr10	6987654	6987657	3
Deletion	Chr4	7963105	7963106	1
Deletion	Chr4	8179604	8179605	1
Deletion	Chr4	8197053	8197054	1
Deletion	Chr5	10294725	10294726	1
Deletion	Chr3	14256170	14256171	1
Deletion	Chr8	14791165	14791166	1
Deletion	Chr6	15445719	15445720	1
Deletion	Chr1	15747699	15747701	2
Deletion	Chr9	15848817	15848858	41
Deletion	Chr10	16007483	16007484	1
Deletion	Chr12	19690940	19690943	3
Deletion	Chr4	19764151	19764152	1
Deletion	Chr4	21036117	21036118	1	LOC_Os04g34690
Deletion	Chr8	22117269	22117273	4
Deletion	Chr8	23343209	23343211	2
Deletion	Chr6	28484506	28484508	2
Deletion	Chr1	35671123	35671125	2

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	27491071	27491075	5
Insertion	Chr1	39518396	39518449	54
Insertion	Chr10	12723232	12723232	1
Insertion	Chr10	15567015	15567015	1
Insertion	Chr10	5892407	5892433	27
Insertion	Chr10	9292941	9292941	1
Insertion	Chr2	29007674	29007749	76
Insertion	Chr2	9206878	9206878	1
Insertion	Chr3	18861924	18861924	1
Insertion	Chr3	5235788	5235818	31
Insertion	Chr4	2461485	2461518	34
Insertion	Chr5	25552582	25552582	1
Insertion	Chr5	8258085	8258106	22
Insertion	Chr6	16047173	16047241	69
Insertion	Chr8	26270875	26270904	30

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	11436593	11554948	LOC_Os07g19530
Inversion	Chr7	11436613	11554949	LOC_Os07g19530
Inversion	Chr1	14383549	14798170

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	126321	Chr7	14047221
Translocation	Chr4	7859118	Chr2	21394561
Translocation	Chr10	9659330	Chr5	24904643
Translocation	Chr12	11160083	Chr6	22606150
Translocation	Chr10	11636716	Chr5	8932310
Translocation	Chr12	12528794	Chr2	13956794	LOC_Os02g24090
Translocation	Chr11	19870432	Chr8	5195559	LOC_Os11g33970
Translocation	Chr11	26139359	Chr10	12950174

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