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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34156562	C-A	HET	INTRON
SBS	Chr2	11324400	C-A	HET	INTERGENIC
SBS	Chr3	18702701	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	20738994	C-T	HOMO	INTRON
SBS	Chr3	20738995	G-T	HOMO	INTRON
SBS	Chr3	20744978	T-A	HOMO	INTRON
SBS	Chr3	20744979	C-A	HOMO	INTRON
SBS	Chr3	20744980	A-G	HOMO	INTRON
SBS	Chr4	9760830	G-A	HET	INTERGENIC
SBS	Chr4	11603350	C-T	HET	INTERGENIC
SBS	Chr4	17707440	G-A	HET	INTERGENIC
SBS	Chr4	19315924	G-A	HET	INTERGENIC
SBS	Chr5	25366952	C-T	HET	INTERGENIC
SBS	Chr7	23717957	T-A	HET	INTRON
SBS	Chr9	1883987	G-T	HET	INTERGENIC
SBS	Chr9	13520400	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	15455822	T-A	HET	START_GAINED
SBS	Chr9	18270963	T-C	HET	INTERGENIC
SBS	Chr10	274078	G-A	HET	INTERGENIC
SBS	Chr10	8921275	G-A	HOMO	INTRON
SBS	Chr11	3594075	G-A	HOMO	STOP_GAINED	LOC_Os11g07190
SBS	Chr11	11340120	C-T	HET	INTERGENIC
SBS	Chr12	1922988	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04520
SBS	Chr12	12606021	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22320
SBS	Chr12	12606022	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22320
SBS	Chr12	12606028	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22320
SBS	Chr12	24559089	T-A	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	542917	542927	10
Deletion	Chr3	943727	943728	1
Deletion	Chr8	2626572	2626574	2
Deletion	Chr4	4380376	4380381	5
Deletion	Chr8	9036664	9036699	35
Deletion	Chr3	16370636	16370644	8
Deletion	Chr11	16728407	16728409	2
Deletion	Chr1	16770149	16770150	1
Deletion	Chr6	17396181	17396195	14
Deletion	Chr7	17588446	17588499	53	LOC_Os07g29880
Deletion	Chr11	18955921	18955923	2
Deletion	Chr3	20744837	20744840	3
Deletion	Chr3	21650623	21650624	1
Deletion	Chr11	22394737	22394748	11
Deletion	Chr8	23305397	23305398	1
Deletion	Chr7	25473574	25473582	8
Deletion	Chr8	25999665	25999679	14	LOC_Os08g41160
Deletion	Chr2	32381424	32381427	3	LOC_Os02g52950

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	27302966	27302967	2
Insertion	Chr1	10767261	10767272	12
Insertion	Chr1	12684453	12684462	10
Insertion	Chr3	17533828	17533841	14
Insertion	Chr5	29648206	29648227	22
Insertion	Chr8	17025537	17025538	2
Insertion	Chr11	13254646	13254646	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7002006	7002337

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	4657364	Chr2	31533732	LOC_Os02g51490
Translocation	Chr6	4657683	Chr2	31533746	LOC_Os02g51490
Translocation	Chr7	15549621	Chr6	10850026	LOC_Os06g19080
Translocation	Chr11	15722920	Chr9	6881099
Translocation	Chr11	19930910	Chr8	19933685
Translocation	Chr7	23615209	Chr1	31062108
Translocation	Chr7	23615319	Chr1	31062102
Translocation	Chr12	27050796	Chr7	5814243

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