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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13034261	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g23200
SBS	Chr1	13706071	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g24330
SBS	Chr1	17268051	A-T	HOMO	INTRON
SBS	Chr1	19612836	C-T	HET	INTERGENIC
SBS	Chr1	30599279	G-A	HOMO	INTERGENIC
SBS	Chr1	36466371	C-A	HET	UTR_3_PRIME
SBS	Chr1	36563008	G-A	HET	INTERGENIC
SBS	Chr10	18338113	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g34390
SBS	Chr10	5894780	C-T	HOMO	INTERGENIC
SBS	Chr10	9872200	C-G	HET	INTRON
SBS	Chr11	10240895	T-A	HET	INTRON
SBS	Chr12	20323249	T-A	HET	INTERGENIC
SBS	Chr2	11825424	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g20080
SBS	Chr2	13244763	T-C	HET	INTERGENIC
SBS	Chr2	17666453	A-G	HET	INTRON
SBS	Chr3	12177883	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	23314704	G-C	HET	INTRON
SBS	Chr3	23723958	C-T	HET	INTERGENIC
SBS	Chr3	36087711	C-T	HOMO	INTRON
SBS	Chr4	15965521	C-T	HOMO	INTERGENIC
SBS	Chr4	2369265	G-C	HET	INTRON
SBS	Chr6	14356513	C-A	HET	INTERGENIC
SBS	Chr6	15194385	C-T	HET	INTRON
SBS	Chr6	15988784	C-T	HET	INTERGENIC
SBS	Chr6	24674147	G-T	HET	INTERGENIC
SBS	Chr6	5354977	C-T	HET	INTERGENIC
SBS	Chr7	15051656	G-T	HOMO	INTERGENIC
SBS	Chr7	21461588	T-A	HOMO	INTERGENIC
SBS	Chr7	3200680	A-G	HET	INTRON
SBS	Chr7	3961308	A-C	HOMO	INTERGENIC
SBS	Chr8	3029605	A-T	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	6683360	6683451	91
Deletion	Chr8	7284001	7309000	24999	3
Deletion	Chr9	7767809	7767810	1
Deletion	Chr2	8842878	8842885	7
Deletion	Chr1	11942313	11942317	4
Deletion	Chr2	13221841	13221842	1
Deletion	Chr9	17247001	17374000	126999	17
Deletion	Chr10	18639159	18639168	9
Deletion	Chr11	21878497	21878498	1
Deletion	Chr3	22207680	22207681	1
Deletion	Chr3	23677307	23677311	4
Deletion	Chr8	24061128	24061129	1
Deletion	Chr1	25600582	25600586	4
Deletion	Chr4	28852012	28852014	2
Deletion	Chr6	31128490	31128505	15
Deletion	Chr2	34703839	34703848	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	15917270	15917285	16
Insertion	Chr3	24914061	24914070	10
Insertion	Chr4	28151652	28151665	14
Insertion	Chr5	14007127	14007144	18

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1411351	1411554
Inversion	Chr8	6726846	7393579

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2018271	Chr5	17162018	LOC_Os05g29690

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