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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19343132	G-A	HET	INTERGENIC
SBS	Chr1	32744789	C-T	HET	INTERGENIC
SBS	Chr1	38219639	A-C	HET	INTRON
SBS	Chr2	13386292	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g22410
SBS	Chr2	14785123	C-T	HET	INTERGENIC
SBS	Chr2	16200595	C-T	HET	INTERGENIC
SBS	Chr2	21351643	G-A	HET	INTERGENIC
SBS	Chr3	14934649	G-C	HET	INTRON
SBS	Chr3	18727295	A-G	HET	INTERGENIC
SBS	Chr3	36133204	A-T	HET	INTRON
SBS	Chr4	1249991	C-T	HOMO	INTRON
SBS	Chr4	1696079	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g03790
SBS	Chr4	7757553	G-T	HET	INTERGENIC
SBS	Chr4	20273029	G-A	HET	INTERGENIC
SBS	Chr4	31492677	C-T	HET	INTERGENIC
SBS	Chr5	6357248	A-G	HET	INTERGENIC
SBS	Chr5	8787446	G-A	HOMO	INTRON
SBS	Chr5	8825879	C-T	HOMO	INTRON
SBS	Chr5	10258844	G-A	HOMO	INTERGENIC
SBS	Chr6	21230561	G-A	HOMO	INTRON
SBS	Chr6	23192203	T-A	HOMO	INTERGENIC
SBS	Chr7	6195094	G-T	HET	INTERGENIC
SBS	Chr7	12877750	A-G	HET	INTERGENIC
SBS	Chr7	26760017	G-A	HOMO	INTERGENIC
SBS	Chr8	7866051	T-G	HET	INTERGENIC
SBS	Chr8	18005193	T-C	HOMO	INTERGENIC
SBS	Chr8	23670129	G-A	HET	INTRON
SBS	Chr9	7436164	G-T	HET	INTERGENIC
SBS	Chr9	18233362	G-A	HOMO	INTERGENIC
SBS	Chr9	18353404	G-T	HOMO	INTERGENIC
SBS	Chr9	22554318	C-T	HOMO	INTERGENIC
SBS	Chr10	20207054	T-G	HET	INTERGENIC
SBS	Chr10	22947207	G-A	HET	INTERGENIC
SBS	Chr11	16297962	C-T	HET	INTERGENIC
SBS	Chr11	16622564	T-C	HET	INTERGENIC
SBS	Chr11	17281525	G-A	HOMO	INTERGENIC
SBS	Chr12	3133406	T-G	HOMO	INTERGENIC
SBS	Chr12	15993669	G-A	HET	INTERGENIC
SBS	Chr12	17396128	T-C	HET	INTERGENIC
SBS	Chr12	18865476	G-A	HET	INTERGENIC
SBS	Chr12	22917636	G-A	HET	INTERGENIC
SBS	Chr12	27403562	T-C	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	123001	227000	103999	18
Deletion	Chr4	319918	319957	39
Deletion	Chr1	472599	472600	1
Deletion	Chr9	618078	618084	6
Deletion	Chr2	778401	778402	1
Deletion	Chr11	1178573	1178593	20
Deletion	Chr5	1978387	1978395	8
Deletion	Chr5	4452303	4452315	12
Deletion	Chr8	4537433	4537434	1
Deletion	Chr8	4795229	4795230	1	LOC_Os08g08350
Deletion	Chr2	8545924	8545925	1
Deletion	Chr3	10675186	10675188	2
Deletion	Chr1	14876001	14973000	96999	13
Deletion	Chr10	17105281	17105282	1	LOC_Os10g32649
Deletion	Chr3	17761966	17761969	3	LOC_Os03g31190
Deletion	Chr11	17887524	17887534	10
Deletion	Chr10	17937363	17937365	2
Deletion	Chr7	18174124	18174125	1
Deletion	Chr8	18831129	18831131	2
Deletion	Chr2	20192699	20192700	1
Deletion	Chr6	21147935	21147939	4	LOC_Os06g36140
Deletion	Chr6	23792838	23792840	2	LOC_Os06g40000
Deletion	Chr11	24974232	24974233	1
Deletion	Chr3	25248173	25248174	1
Deletion	Chr8	27102329	27102338	9
Deletion	Chr2	27694813	27694814	1
Deletion	Chr4	31056708	31056728	20
Deletion	Chr1	37205876	37205877	1

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	20221587	20221587	1
Insertion	Chr2	28646933	28646933	1
Insertion	Chr4	31262213	31262214	2
Insertion	Chr11	18673792	18673794	3
Insertion	Chr1	14714491	14714495	5
Insertion	Chr1	26965292	26965292	1	LOC_Os01g47170
Insertion	Chr3	14364836	14364839	4
Insertion	Chr6	29311666	29311696	31
Insertion	Chr7	14145142	14145145	4
Insertion	Chr7	19676771	19676771	1
Insertion	Chr9	3186099	3186110	12
Insertion	Chr9	7458170	7458173	4
Insertion	Chr10	8646345	8646345	1
Insertion	Chr10	19293073	19293094	22
Insertion	Chr11	13568674	13568674	1
Insertion	Chr12	9382108	9382148	41
Insertion	Chr12	23279438	23279455	18

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9780924	9841553
Inversion	Chr8	15630641	15630800	LOC_Os08g25690
Inversion	Chr8	19443308	19446737	LOC_Os08g31440
Inversion	Chr8	19443316	19446746	LOC_Os08g31440

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	215158	Chr11	188773
Translocation	Chr12	222206	Chr10	11161965
Translocation	Chr3	18709598	Chr1	31237474	LOC_Os01g54290
Translocation	Chr3	18709620	Chr1	31217068
Translocation	Chr3	23789643	Chr2	24446678	2

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