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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17526113	G-A	HOMO	INTRON
SBS	Chr1	24943590	C-A	HOMO	INTERGENIC
SBS	Chr11	15876750	G-A	HOMO	INTRON
SBS	Chr11	16248135	A-G	HET	INTERGENIC
SBS	Chr11	25990442	C-A	HOMO	STOP_GAINED	LOC_Os11g43080
SBS	Chr11	26117339	T-C	HOMO	INTRON
SBS	Chr12	10518687	C-G	HET	INTERGENIC
SBS	Chr12	11648761	G-A	HOMO	INTRON
SBS	Chr12	25788420	G-C	HET	INTERGENIC
SBS	Chr2	12839041	G-T	HET	INTERGENIC
SBS	Chr2	12839042	A-T	HET	INTERGENIC
SBS	Chr2	13259436	C-T	HET	INTERGENIC
SBS	Chr2	68178	T-C	HET	INTERGENIC
SBS	Chr3	18536414	A-T	HET	INTRON
SBS	Chr3	21553602	C-T	HET	INTERGENIC
SBS	Chr3	28312465	C-G	HET	INTERGENIC
SBS	Chr3	8979672	G-T	HET	INTERGENIC
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr4	23025362	C-G	HET	INTRON
SBS	Chr4	27134122	A-C	HOMO	INTRON
SBS	Chr4	27134123	T-A	HOMO	INTRON
SBS	Chr4	33811629	G-C	HET	INTRON
SBS	Chr4	5815354	G-T	HET	INTERGENIC
SBS	Chr5	4465676	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g08190
SBS	Chr5	5453462	C-G	HET	INTERGENIC
SBS	Chr5	7826087	T-A	HET	INTERGENIC
SBS	Chr6	10857836	C-T	HOMO	INTERGENIC
SBS	Chr6	112508	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	25585719	A-G	HOMO	INTERGENIC
SBS	Chr6	5459478	A-G	HOMO	INTERGENIC
SBS	Chr7	23447304	A-T	HET	INTERGENIC
SBS	Chr7	28814589	G-A	HOMO	INTRON
SBS	Chr7	29061348	C-T	HOMO	INTERGENIC
SBS	Chr8	2309744	A-T	HET	UTR_3_PRIME
SBS	Chr9	12188785	T-C	HET	INTERGENIC
SBS	Chr9	17628883	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29000
SBS	Chr9	17628885	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g29000
SBS	Chr9	6321943	G-A	HET	INTERGENIC

Deletions: 45

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	407645	407646	1
Deletion	Chr1	487745	487747	2
Deletion	Chr11	756688	756689	1
Deletion	Chr8	3016138	3016140	2
Deletion	Chr11	3066293	3066295	2
Deletion	Chr8	4252392	4252457	65
Deletion	Chr10	5081996	5081997	1
Deletion	Chr5	5668809	5668812	3	LOC_Os05g10400
Deletion	Chr8	6937947	6937950	3
Deletion	Chr5	7247566	7247602	36
Deletion	Chr8	8605795	8605816	21
Deletion	Chr3	9472945	9472946	1
Deletion	Chr9	9706659	9706660	1	LOC_Os09g15880
Deletion	Chr4	9854056	9854133	77	LOC_Os04g17920
Deletion	Chr7	11227683	11227684	1
Deletion	Chr3	11401979	11401980	1
Deletion	Chr7	11613061	11613103	42
Deletion	Chr1	11667817	11667910	93
Deletion	Chr8	12663826	12663842	16	LOC_Os08g21210
Deletion	Chr1	12715900	12715901	1
Deletion	Chr5	14238696	14238697	1
Deletion	Chr8	14927379	14927509	130	LOC_Os08g24700
Deletion	Chr12	15609997	15610006	9
Deletion	Chr8	15637337	15637339	2
Deletion	Chr10	17285826	17285849	23	LOC_Os10g33010
Deletion	Chr7	18142127	18142128	1	LOC_Os07g30660
Deletion	Chr3	18954854	18954857	3	LOC_Os03g33130
Deletion	Chr7	19003107	19003147	40
Deletion	Chr2	19217433	19217462	29
Deletion	Chr6	19679791	19679794	3	LOC_Os06g33820
Deletion	Chr2	21744348	21744353	5
Deletion	Chr7	21957725	21957726	1
Deletion	Chr9	22059074	22059081	7
Deletion	Chr7	23015992	23015994	2
Deletion	Chr4	24713489	24713490	1	LOC_Os04g41690
Deletion	Chr5	24952707	24952708	1
Deletion	Chr2	25656396	25656397	1
Deletion	Chr11	27467160	27467168	8
Deletion	Chr3	28983778	28983779	1
Deletion	Chr6	29613748	29613749	1
Deletion	Chr1	29640472	29640473	1
Deletion	Chr2	30406783	30406784	1
Deletion	Chr2	32060236	32060237	1	LOC_Os02g52380
Deletion	Chr1	34345889	34345891	2
Deletion	Chr1	36614284	36614288	4

Insertions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16890996	16890996	1
Insertion	Chr10	3606691	3606696	6
Insertion	Chr10	5005559	5005581	23
Insertion	Chr11	18632306	18632306	1	LOC_Os11g31760
Insertion	Chr11	5093957	5094008	52
Insertion	Chr11	5391782	5391821	40
Insertion	Chr11	8196780	8196780	1
Insertion	Chr12	21964312	21964312	1
Insertion	Chr12	8548657	8548658	2
Insertion	Chr2	31370667	31370667	1
Insertion	Chr3	19577286	19577286	1
Insertion	Chr3	20533415	20533417	3
Insertion	Chr3	36001143	36001144	2
Insertion	Chr4	10085542	10085542	1
Insertion	Chr4	18813966	18813966	1
Insertion	Chr4	23681220	23681220	1
Insertion	Chr4	34560975	34560975	1
Insertion	Chr5	1336836	1336836	1
Insertion	Chr5	21990366	21990367	2	LOC_Os05g37580
Insertion	Chr5	5791120	5791137	18	LOC_Os05g10625
Insertion	Chr6	29270737	29270737	1
Insertion	Chr8	11170988	11170988	1
Insertion	Chr8	12468710	12468769	60
Insertion	Chr8	16171403	16171403	1
Insertion	Chr9	16680650	16680665	16
Insertion	Chr9	2376786	2376786	1
Insertion	Chr9	4904724	4904724	1
Insertion	Chr9	85398	85398	1
Insertion	Chr9	9711261	9711261	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17445840	17732482	LOC_Os09g29160
Inversion	Chr1	40451040	40451246

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3244590	Chr8	24662083
Translocation	Chr3	10637213	Chr2	15315086
Translocation	Chr5	12928235	Chr2	474617
Translocation	Chr12	13483915	Chr6	4522761
Translocation	Chr12	13512466	Chr2	18912678	LOC_Os12g23780
Translocation	Chr9	17433712	Chr6	21195750
Translocation	Chr9	17445824	Chr6	21196272
Translocation	Chr6	20268294	Chr2	10257940
Translocation	Chr6	21950536	Chr1	13413514
Translocation	Chr3	22400805	Chr2	18238533

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