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Mutant Information

Mutant Name	FN3235-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3235-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3392624	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g07180
SBS	Chr1	30188600	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr1	30847632	C-A	HOMO	INTERGENIC
SBS	Chr1	33415855	T-A	HOMO	INTERGENIC
SBS	Chr2	11090563	G-A	HOMO	INTRON
SBS	Chr2	17595424	C-A	HET	INTERGENIC
SBS	Chr2	24934526	A-C	HET	INTERGENIC
SBS	Chr3	15500283	A-G	HET	INTERGENIC
SBS	Chr3	23901899	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g42870
SBS	Chr3	33284117	T-C	HET	INTERGENIC
SBS	Chr3	35942243	G-A	HET	INTERGENIC
SBS	Chr4	9475924	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17280
SBS	Chr4	31281608	G-A	HET	INTRON
SBS	Chr4	32081869	T-A	HET	UTR_3_PRIME
SBS	Chr5	5141062	T-G	HET	INTRON
SBS	Chr5	7280007	G-A	HET	INTRON
SBS	Chr5	9660416	T-G	HET	INTERGENIC
SBS	Chr5	24246940	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g41410
SBS	Chr6	2421030	C-T	HOMO	UTR_3_PRIME
SBS	Chr6	2940483	A-G	HET	INTRON
SBS	Chr6	5380110	G-A	HET	INTERGENIC
SBS	Chr7	6543809	A-G	HOMO	INTERGENIC
SBS	Chr7	23258848	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	26185772	G-T	HET	INTERGENIC
SBS	Chr8	3346528	A-G	HET	INTERGENIC
SBS	Chr8	4436752	C-T	HET	INTERGENIC
SBS	Chr8	6466393	G-A	HET	INTERGENIC
SBS	Chr8	6797149	C-A	HET	STOP_GAINED	LOC_Os08g11590
SBS	Chr8	20653778	T-C	HOMO	INTERGENIC
SBS	Chr9	355205	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01480
SBS	Chr9	15748883	A-G	HET	INTERGENIC
SBS	Chr10	1227152	G-T	HET	INTERGENIC
SBS	Chr10	5028681	C-T	HET	INTRON
SBS	Chr10	5616093	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	15670232	C-A	HOMO	INTERGENIC
SBS	Chr10	22012756	A-G	HET	UTR_3_PRIME
SBS	Chr11	15180057	G-A	HOMO	INTERGENIC
SBS	Chr11	15532912	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26990
SBS	Chr11	15997905	G-A	HET	INTERGENIC
SBS	Chr11	18742957	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31890
SBS	Chr11	21347402	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	24762378	C-A	HOMO	INTERGENIC
SBS	Chr12	2290420	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g05180
SBS	Chr12	7490000	T-G	HET	INTERGENIC
SBS	Chr12	11148699	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19200
SBS	Chr12	20567780	T-C	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	79206	79559	353
Deletion	Chr4	2316186	2316187	1
Deletion	Chr10	2579147	2579148	1
Deletion	Chr8	3305001	3343000	37999	4
Deletion	Chr7	5187222	5187223	1	LOC_Os07g09730
Deletion	Chr7	5926643	5926644	1
Deletion	Chr1	8452656	8452658	2
Deletion	Chr12	9117337	9117339	2	LOC_Os12g16000
Deletion	Chr10	11456298	11456359	61
Deletion	Chr5	12974311	12974313	2
Deletion	Chr5	14803613	14803616	3
Deletion	Chr3	16957737	16957764	27
Deletion	Chr12	17059018	17059026	8
Deletion	Chr2	17793853	17793854	1	LOC_Os02g29920
Deletion	Chr4	18161760	18161761	1
Deletion	Chr3	19362931	19362937	6
Deletion	Chr3	19758922	19758987	65	LOC_Os03g35670
Deletion	Chr12	19883127	19883129	2
Deletion	Chr5	20526001	20563000	36999	6
Deletion	Chr4	20749713	20749714	1
Deletion	Chr3	22311001	22321000	9999	LOC_Os03g40160
Deletion	Chr12	23259866	23259867	1
Deletion	Chr2	25639394	25639401	7	LOC_Os02g42620

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	16212030	16212031	2
Insertion	Chr2	9034220	9034237	18
Insertion	Chr3	13381615	13381615	1
Insertion	Chr3	24138400	24138400	1	LOC_Os03g43290
Insertion	Chr4	1552700	1552700	1
Insertion	Chr4	7914316	7914319	4
Insertion	Chr4	28883702	28883736	35
Insertion	Chr4	33521124	33521206	83
Insertion	Chr5	6127134	6127134	1
Insertion	Chr5	14364472	14364543	72
Insertion	Chr5	17036282	17036293	12
Insertion	Chr5	29179565	29179565	1
Insertion	Chr6	9308320	9308320	1
Insertion	Chr7	9057510	9057513	4	LOC_Os07g15620
Insertion	Chr8	16599949	16600020	72
Insertion	Chr8	17293658	17293661	4
Insertion	Chr10	2445796	2445859	64
Insertion	Chr11	8657552	8657552	1
Insertion	Chr11	13435196	13435237	42
Insertion	Chr12	12038230	12038230	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10033036	10042982	LOC_Os04g18150
Inversion	Chr4	10033038	10042980	LOC_Os04g18150
Inversion	Chr5	20526178	20753238
Inversion	Chr5	20562376	20753247
Inversion	Chr1	40722238	40722345

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	262349	Chr6	14440085
Translocation	Chr12	6029211	Chr3	15242979	LOC_Os12g11190
Translocation	Chr5	7361082	Chr1	31164154
Translocation	Chr8	8928502	Chr6	17497732
Translocation	Chr4	8961811	Chr1	8614310
Translocation	Chr10	12388005	Chr1	18490988
Translocation	Chr7	12634256	Chr1	34701303
Translocation	Chr7	12634260	Chr1	34701297
Translocation	Chr11	21580976	Chr9	8955214

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