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Mutant Information

Mutant Name	FN3236-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3236-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 52

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28801036	C-T	HOMO	UTR_3_PRIME
SBS	Chr1	36239007	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g62600
SBS	Chr1	40576884	A-G	HOMO	INTERGENIC
SBS	Chr2	13193334	C-A	HET	INTERGENIC
SBS	Chr2	14419393	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24870
SBS	Chr2	28995598	G-C	HET	INTERGENIC
SBS	Chr2	35524517	G-A	HET	INTERGENIC
SBS	Chr3	1610549	G-A	HET	INTRON
SBS	Chr3	11436163	T-C	HET	INTERGENIC
SBS	Chr3	11452284	T-A	HET	INTERGENIC
SBS	Chr3	13765723	A-G	HET	INTERGENIC
SBS	Chr3	17713352	A-G	HET	INTERGENIC
SBS	Chr4	1515347	C-A	HOMO	INTERGENIC
SBS	Chr4	3419458	G-A	HET	STOP_GAINED	LOC_Os04g06510
SBS	Chr4	4579776	G-A	HOMO	INTERGENIC
SBS	Chr4	31328501	A-G	HET	INTERGENIC
SBS	Chr4	34175159	T-C	HET	INTRON
SBS	Chr5	981659	C-T	HET	INTERGENIC
SBS	Chr5	11296798	C-T	HET	INTRON
SBS	Chr5	16969746	A-G	HET	INTRON
SBS	Chr6	1107683	G-A	HET	INTERGENIC
SBS	Chr6	6348679	A-G	HET	INTERGENIC
SBS	Chr6	17364138	G-A	HET	INTERGENIC
SBS	Chr7	180900	G-A	HET	STOP_GAINED	LOC_Os07g01290
SBS	Chr7	8802657	G-T	HET	INTERGENIC
SBS	Chr7	16366001	A-C	HET	INTERGENIC
SBS	Chr7	17067571	C-T	HET	INTRON
SBS	Chr7	18336267	A-T	HET	INTRON
SBS	Chr7	23625332	G-A	HET	INTRON
SBS	Chr7	25275195	A-G	HET	INTERGENIC
SBS	Chr8	6685630	T-C	HET	INTERGENIC
SBS	Chr8	6823189	T-C	HET	INTERGENIC
SBS	Chr8	20465701	A-T	HOMO	INTERGENIC
SBS	Chr8	20465702	C-T	HOMO	INTERGENIC
SBS	Chr8	21020174	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g33660
SBS	Chr9	127577	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01120
SBS	Chr9	4204580	G-T	HOMO	INTERGENIC
SBS	Chr9	5554624	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	12284005	G-T	HET	INTERGENIC
SBS	Chr9	15654509	C-A	HET	INTERGENIC
SBS	Chr10	353275	C-G	HET	INTRON
SBS	Chr10	7320499	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g13530
SBS	Chr10	19844937	C-T	HET	INTERGENIC
SBS	Chr11	8886060	C-G	HET	INTERGENIC
SBS	Chr11	13605675	A-C	HET	INTERGENIC
SBS	Chr11	17119974	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29510
SBS	Chr12	3341156	G-A	HET	INTRON
SBS	Chr12	3995526	A-G	HET	INTERGENIC
SBS	Chr12	4082646	C-T	HET	INTRON
SBS	Chr12	9214927	C-T	HET	INTERGENIC
SBS	Chr12	14395807	C-A	HET	INTERGENIC
SBS	Chr12	24725907	A-T	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1436970	1436987	17
Deletion	Chr9	2271542	2271554	12	LOC_Os09g04270
Deletion	Chr2	4142416	4142430	14
Deletion	Chr8	4211948	4211952	4	LOC_Os08g07500
Deletion	Chr8	5497384	5497386	2	LOC_Os08g09490
Deletion	Chr7	5500910	5500919	9	LOC_Os07g10250
Deletion	Chr8	6616764	6616765	1
Deletion	Chr5	6786278	6786280	2
Deletion	Chr5	7281008	7281013	5
Deletion	Chr2	7389595	7389596	1
Deletion	Chr9	7786020	7786024	4
Deletion	Chr3	8416893	8416918	25
Deletion	Chr11	8689441	8689533	92
Deletion	Chr5	8739318	8739319	1
Deletion	Chr4	9003268	9003269	1
Deletion	Chr4	9822377	9822378	1	LOC_Os04g17870
Deletion	Chr4	9944530	9944540	10
Deletion	Chr10	10285899	10285919	20
Deletion	Chr8	11062599	11062600	1
Deletion	Chr8	12977073	12977074	1
Deletion	Chr8	15698227	15698230	3
Deletion	Chr11	16562244	16562248	4
Deletion	Chr8	16705185	16705186	1
Deletion	Chr8	20634590	20634597	7
Deletion	Chr8	20974149	20974175	26
Deletion	Chr1	22997213	22997222	9	LOC_Os01g40690
Deletion	Chr3	23571790	23571791	1
Deletion	Chr1	23755474	23755493	19
Deletion	Chr12	25221568	25221569	1
Deletion	Chr8	25701732	25701741	9
Deletion	Chr5	26883995	26884002	7
Deletion	Chr7	27215960	27215961	1
Deletion	Chr2	32366555	32366556	1
Deletion	Chr1	35079159	35079160	1
Deletion	Chr1	36757594	36757604	10

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	9949890	9949891	2
Insertion	Chr7	4435376	4435376	1	LOC_Os07g08610
Insertion	Chr11	8060581	8060582	2
Insertion	Chr1	11574409	11574442	34
Insertion	Chr1	20999703	20999705	3
Insertion	Chr1	30178142	30178169	28
Insertion	Chr4	1370481	1370481	1
Insertion	Chr4	11739351	11739404	54
Insertion	Chr5	10317626	10317626	1
Insertion	Chr6	14261124	14261128	5
Insertion	Chr7	21020809	21020810	2
Insertion	Chr8	20285311	20285312	2
Insertion	Chr9	10126944	10126967	24
Insertion	Chr11	19416435	19416436	2
Insertion	Chr12	9033574	9033574	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14570352	14576746
Inversion	Chr3	14570371	14576747

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	10523812	Chr7	8953433

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