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Mutant Information

Mutant Name	FN3239-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3239-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8859364	C-T	HET	INTERGENIC
SBS	Chr1	9286736	G-A	HET	INTERGENIC
SBS	Chr1	10794769	C-T	HET	INTERGENIC
SBS	Chr1	11951290	C-T	HET	INTERGENIC
SBS	Chr1	21698666	C-T	HET	INTERGENIC
SBS	Chr1	23923820	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g42234
SBS	Chr2	4630341	A-C	HET	UTR_3_PRIME
SBS	Chr2	6652352	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	11109211	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g19020
SBS	Chr2	25518934	C-T	HOMO	INTRON
SBS	Chr4	6171837	G-A	HOMO	INTERGENIC
SBS	Chr5	4371850	C-T	HET	INTERGENIC
SBS	Chr5	9969334	C-T	HET	INTERGENIC
SBS	Chr5	10477914	G-A	HET	INTERGENIC
SBS	Chr5	10546935	G-A	HET	INTERGENIC
SBS	Chr5	11809259	G-T	HOMO	INTRON
SBS	Chr5	21844937	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g37350
SBS	Chr5	21847128	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g37350
SBS	Chr5	24156590	T-C	HOMO	START_GAINED
SBS	Chr6	5390796	C-T	HET	INTERGENIC
SBS	Chr6	9344762	A-G	HET	INTERGENIC
SBS	Chr6	18103071	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g31160
SBS	Chr6	22938351	G-C	HET	INTERGENIC
SBS	Chr6	28845568	C-T	HET	INTERGENIC
SBS	Chr7	12863373	G-A	HET	INTERGENIC
SBS	Chr7	21472781	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	22649066	A-G	HET	INTRON
SBS	Chr7	28344376	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g47400
SBS	Chr7	29375374	T-A	HET	INTERGENIC
SBS	Chr8	14881428	T-C	HET	INTERGENIC
SBS	Chr8	24311396	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g38400
SBS	Chr9	3675961	C-G	HET	INTERGENIC
SBS	Chr9	8309066	G-A	HET	INTERGENIC
SBS	Chr9	12063019	A-T	HET	INTERGENIC
SBS	Chr9	13809908	T-C	HET	INTERGENIC
SBS	Chr10	2976088	T-A	HET	INTERGENIC
SBS	Chr10	3048228	G-T	HOMO	INTRON
SBS	Chr10	18514723	G-A	HOMO	INTERGENIC
SBS	Chr10	21837291	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g40710
SBS	Chr11	1294037	C-T	HET	INTERGENIC
SBS	Chr11	8548583	G-A	HET	INTRON
SBS	Chr11	9402844	C-A	HET	INTERGENIC
SBS	Chr11	11276335	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	18851190	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31990
SBS	Chr12	11696181	C-T	HET	INTERGENIC
SBS	Chr12	15451601	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26444
SBS	Chr12	17051560	A-G	HET	INTERGENIC
SBS	Chr12	27177689	G-C	HET	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1971218	1971224	6
Deletion	Chr9	2582905	2582906	1	LOC_Os09g04850
Deletion	Chr3	3300721	3300722	1
Deletion	Chr11	6669226	6669232	6
Deletion	Chr7	9281001	9616000	334999	38
Deletion	Chr7	9373552	9373567	15
Deletion	Chr7	9602252	9602253	1
Deletion	Chr11	9850541	9850542	1
Deletion	Chr6	15988354	15988356	2
Deletion	Chr3	17035966	17035967	1
Deletion	Chr6	19679633	19679634	1	LOC_Os06g33820
Deletion	Chr3	22193212	22193214	2
Deletion	Chr11	22414001	22441000	26999	3
Deletion	Chr11	23374413	23374419	6
Deletion	Chr11	28252936	28253028	92	LOC_Os11g47229

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	6159278	6159281	4
Insertion	Chr11	11378557	11378558	2
Insertion	Chr12	599530	599531	2
Insertion	Chr2	5699278	5699289	12
Insertion	Chr2	17068098	17068185	88
Insertion	Chr2	24709729	24709732	4
Insertion	Chr3	33558093	33558096	4
Insertion	Chr4	7238958	7238963	6
Insertion	Chr4	12476892	12476910	19
Insertion	Chr6	18408996	18408996	1
Insertion	Chr6	22522042	22522042	1
Insertion	Chr7	16836657	16836657	1	LOC_Os07g28760
Insertion	Chr8	7628536	7628628	93

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14561509	15111350
Inversion	Chr7	14565739	15111377
Inversion	Chr2	16288125	16396096
Inversion	Chr12	25035888	25036241	LOC_Os12g40460

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	14561516	Chr3	5166431	LOC_Os03g10180
Translocation	Chr7	14561679	Chr3	5166434	LOC_Os03g10180
Translocation	Chr4	29134719	Chr2	30717913
Translocation	Chr4	29134799	Chr2	30717938

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