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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17201402	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g31460
SBS	Chr1	26064774	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45880
SBS	Chr1	28778462	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g50080
SBS	Chr1	28778463	A-T	HET	SYNONYMOUS_CODING
SBS	Chr1	9984187	T-C	HET	INTERGENIC
SBS	Chr10	12868317	G-A	HET	INTRON
SBS	Chr11	7354108	G-T	HOMO	INTERGENIC
SBS	Chr11	7354109	A-T	HOMO	INTERGENIC
SBS	Chr12	24553170	G-T	HOMO	INTERGENIC
SBS	Chr12	594357	G-A	HET	INTERGENIC
SBS	Chr3	1559831	T-C	HET	INTERGENIC
SBS	Chr3	16789087	A-G	HET	INTERGENIC
SBS	Chr3	9382869	T-C	HET	INTERGENIC
SBS	Chr4	31699452	T-A	HOMO	INTRON
SBS	Chr4	34284558	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g57610
SBS	Chr4	9730071	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17760
SBS	Chr5	11717809	C-A	HET	INTRON
SBS	Chr5	17669840	G-A	HET	INTERGENIC
SBS	Chr5	22350329	C-T	HOMO	INTERGENIC
SBS	Chr5	24347877	G-A	HOMO	INTRON
SBS	Chr5	24347878	G-A	HOMO	INTRON
SBS	Chr6	15399316	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g26310
SBS	Chr6	15871918	A-T	HET	SYNONYMOUS_CODING
SBS	Chr6	9662188	G-A	HET	INTERGENIC
SBS	Chr6	9662189	T-A	HET	INTERGENIC
SBS	Chr7	12474980	C-T	HET	INTERGENIC
SBS	Chr9	16313243	C-T	HET	INTERGENIC
SBS	Chr9	21024566	T-C	HET	INTERGENIC
SBS	Chr9	4763164	T-C	HOMO	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr11	738113	738122	9
Deletion	Chr1	4705720	4705722	2
Deletion	Chr8	6654032	6654040	8
Deletion	Chr8	6908121	6908151	30
Deletion	Chr5	9824576	9824579	3
Deletion	Chr2	12059063	12059096	33
Deletion	Chr7	12229807	12229808	1
Deletion	Chr6	14476682	14476686	4
Deletion	Chr7	14759827	14759839	12
Deletion	Chr5	16598226	16598246	20
Deletion	Chr6	17033517	17033528	11
Deletion	Chr2	18826500	18826503	3
Deletion	Chr4	19164718	19164719	1
Deletion	Chr12	21054712	21054720	8
Deletion	Chr1	22484788	22484837	49
Deletion	Chr12	23684711	23684722	11
Deletion	Chr12	26022546	26022551	5
Deletion	Chr3	31833892	31833899	7
Deletion	Chr2	31914988	31914990	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	5845665	5845704	40
Insertion	Chr2	17825854	17825854	1
Insertion	Chr2	22258901	22258902	2
Insertion	Chr6	8507675	8507707	33
Insertion	Chr9	10574245	10574245	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr6	13459246	13459485
Inversion	Chr2	26004865	26845040
Inversion	Chr2	26004870	26845058
Inversion	Chr4	33670712	34052741

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2101234	Chr4	18278759	LOC_Os10g04460
Translocation	Chr8	3111662	Chr5	17722750	LOC_Os05g30580
Translocation	Chr8	3287895	Chr3	34809641	LOC_Os08g06020
Translocation	Chr8	6751269	Chr2	610967	LOC_Os02g02080
Translocation	Chr5	17662395	Chr3	34809637
Translocation	Chr11	17782600	Chr8	23501781

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