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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2224340	G-A	HET	INTERGENIC
SBS	Chr1	20202873	C-T	HOMO	INTERGENIC
SBS	Chr1	28720299	G-T	HET	INTRON
SBS	Chr1	28851235	C-T	HET	INTERGENIC
SBS	Chr1	32388953	A-C	HET	INTERGENIC
SBS	Chr2	13177588	A-T	HET	INTERGENIC
SBS	Chr2	13856914	G-A	HET	INTERGENIC
SBS	Chr2	22501529	T-C	HOMO	INTERGENIC
SBS	Chr3	14977844	C-G	HET	INTERGENIC
SBS	Chr3	27819477	C-T	HET	INTERGENIC
SBS	Chr4	7595222	G-C	HET	INTERGENIC
SBS	Chr5	4512103	G-A	HET	INTERGENIC
SBS	Chr5	6553361	A-T	HET	INTERGENIC
SBS	Chr5	8199020	A-T	HET	INTERGENIC
SBS	Chr5	15857292	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27280
SBS	Chr5	21081356	G-T	HET	UTR_3_PRIME
SBS	Chr6	25826150	G-A	HET	INTERGENIC
SBS	Chr7	611192	C-T	HET	INTERGENIC
SBS	Chr7	20169555	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g33730
SBS	Chr7	20169556	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g33730
SBS	Chr7	21051171	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35150
SBS	Chr7	27345590	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45820
SBS	Chr8	23615045	G-T	HET	INTERGENIC
SBS	Chr9	21364413	A-G	HOMO	INTERGENIC
SBS	Chr10	11554802	G-A	HET	INTERGENIC
SBS	Chr10	17096592	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32640
SBS	Chr10	19099840	A-T	HET	SYNONYMOUS_CODING
SBS	Chr10	20503572	T-C	HET	SPLICE_SITE_DONOR	LOC_Os10g38370
SBS	Chr10	20860564	T-A	HET	INTERGENIC
SBS	Chr11	15096452	C-T	HET	INTERGENIC
SBS	Chr11	23240849	C-A	HET	INTERGENIC
SBS	Chr12	675513	T-A	HET	INTRON
SBS	Chr12	22044885	G-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	346730	346731	1
Deletion	Chr6	1146007	1146013	6	LOC_Os06g03110
Deletion	Chr4	4186719	4186720	1
Deletion	Chr5	6123001	6141000	17999	2
Deletion	Chr9	9055964	9055965	1	LOC_Os09g15020
Deletion	Chr12	10315826	10315827	1
Deletion	Chr10	10358766	10358768	2
Deletion	Chr3	14700134	14700142	8
Deletion	Chr1	15931960	15931967	7	LOC_Os01g28440
Deletion	Chr9	17230991	17230997	6
Deletion	Chr7	17963501	17963525	24	LOC_Os07g30350
Deletion	Chr9	21364164	21364172	8
Deletion	Chr2	21901986	21901992	6
Deletion	Chr12	22840287	22840335	48
Deletion	Chr4	23411170	23411177	7
Deletion	Chr12	24165325	24165331	6	LOC_Os12g39260
Deletion	Chr3	26256254	26256255	1
Deletion	Chr6	27799619	27799620	1
Deletion	Chr3	29268406	29268408	2
Deletion	Chr4	30649682	30649683	1	LOC_Os04g51720
Deletion	Chr3	33561325	33561327	2

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	42765156	42765227	72
Insertion	Chr2	8186018	8186023	6
Insertion	Chr2	13663354	13663395	42
Insertion	Chr3	7404426	7404457	32
Insertion	Chr4	870148	870156	9
Insertion	Chr4	3903077	3903077	1
Insertion	Chr4	9530351	9530362	12	LOC_Os04g17420
Insertion	Chr5	12035883	12035883	1
Insertion	Chr6	21472452	21472453	2
Insertion	Chr7	27356422	27356422	1	LOC_Os07g45830
Insertion	Chr8	3731944	3731944	1
Insertion	Chr9	11341172	11341172	1	LOC_Os09g18500
Insertion	Chr12	15031588	15031590	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	19092032	19585400
Inversion	Chr12	19092065	19585402
Inversion	Chr4	30796503	31365941	LOC_Os04g51900
Inversion	Chr4	30796512	31369157	2

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4126991	Chr1	3219749
Translocation	Chr11	4272854	Chr9	3387639	LOC_Os09g06990
Translocation	Chr11	4452873	Chr7	29240857
Translocation	Chr8	14361702	Chr4	28000559
Translocation	Chr8	16384199	Chr7	15520381
Translocation	Chr9	18915076	Chr4	31369155	LOC_Os04g52690
Translocation	Chr9	19025733	Chr4	31365950
Translocation	Chr9	19027031	Chr4	6860291
Translocation	Chr12	19859914	Chr1	29752298
Translocation	Chr5	20367557	Chr3	16525221	LOC_Os03g29100
Translocation	Chr12	20935546	Chr2	19189879

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