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Mutant Information

Mutant Name	FN3245-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3245-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13843500	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24560
SBS	Chr12	24309023	G-A	HET	INTERGENIC
SBS	Chr2	21213387	C-T	HET	INTERGENIC
SBS	Chr2	29368572	G-C	HET	INTERGENIC
SBS	Chr3	24889760	G-A	HOMO	INTERGENIC
SBS	Chr3	30622193	G-A	HET	INTERGENIC
SBS	Chr4	12427480	A-G	HOMO	INTERGENIC
SBS	Chr4	34833940	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	4809526	G-A	HET	INTERGENIC
SBS	Chr5	1675589	A-T	HET	UTR_3_PRIME
SBS	Chr5	28845279	C-G	HET	INTERGENIC
SBS	Chr5	28845280	G-A	HET	INTERGENIC
SBS	Chr6	1913018	C-T	HET	UTR_5_PRIME
SBS	Chr7	16691133	C-G	HET	INTERGENIC
SBS	Chr8	12448995	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr9	3433203	A-G	HET	INTERGENIC

Deletions: 118

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	197516	197517	1
Deletion	Chr12	449284	449285	1
Deletion	Chr11	1198108	1198113	5
Deletion	Chr8	1334263	1334264	1
Deletion	Chr9	1651315	1651327	12
Deletion	Chr1	1819920	1819922	2
Deletion	Chr12	1955692	1955694	2
Deletion	Chr5	1982539	1982591	52
Deletion	Chr9	2285922	2285923	1
Deletion	Chr4	2364928	2365025	97
Deletion	Chr8	2706207	2706210	3	LOC_Os08g05180
Deletion	Chr9	2936380	2936381	1
Deletion	Chr7	3401664	3401665	1
Deletion	Chr5	3907959	3907961	2
Deletion	Chr5	4507891	4507892	1
Deletion	Chr5	4530110	4530111	1
Deletion	Chr1	4555400	4555401	1
Deletion	Chr10	4565997	4566001	4
Deletion	Chr5	5128541	5128542	1	LOC_Os05g09170
Deletion	Chr5	5669206	5669221	15
Deletion	Chr8	5930950	5930953	3	LOC_Os08g10220
Deletion	Chr8	5931138	5931159	21	LOC_Os08g10220
Deletion	Chr10	5960447	5960468	21	LOC_Os10g10780
Deletion	Chr9	6308330	6308331	1	LOC_Os09g11360
Deletion	Chr2	6629956	6629960	4
Deletion	Chr4	6737623	6737624	1
Deletion	Chr8	6918728	6918729	1
Deletion	Chr7	7459481	7459497	16
Deletion	Chr7	7871687	7871688	1
Deletion	Chr10	8093846	8093893	47
Deletion	Chr4	8142327	8142340	13
Deletion	Chr10	8164253	8164256	3
Deletion	Chr1	8338422	8338428	6
Deletion	Chr4	8438412	8438414	2
Deletion	Chr8	8545415	8545416	1
Deletion	Chr5	8712003	8712013	10
Deletion	Chr3	9118757	9118759	2
Deletion	Chr2	9129984	9129985	1	LOC_Os02g16050
Deletion	Chr1	9574968	9574971	3
Deletion	Chr5	9671601	9671607	6	LOC_Os05g16960
Deletion	Chr11	9868426	9868427	1
Deletion	Chr9	9932495	9932500	5
Deletion	Chr4	10219744	10219745	1
Deletion	Chr5	10291464	10291470	6	LOC_Os05g17900
Deletion	Chr4	10813561	10813562	1
Deletion	Chr5	11131325	11131326	1
Deletion	Chr5	11364432	11364475	43
Deletion	Chr7	11613268	11613269	1
Deletion	Chr4	11843784	11843785	1
Deletion	Chr9	11971063	11971064	1
Deletion	Chr3	12215476	12215477	1
Deletion	Chr9	12787862	12787863	1
Deletion	Chr1	12846957	12846958	1
Deletion	Chr4	12856236	12856271	35
Deletion	Chr4	13041511	13041527	16	LOC_Os04g22980
Deletion	Chr1	13065211	13065212	1	LOC_Os01g23230
Deletion	Chr10	13411238	13411239	1
Deletion	Chr8	13463309	13463312	3
Deletion	Chr8	13644875	13644876	1
Deletion	Chr12	13724499	13724502	3	LOC_Os12g24120
Deletion	Chr12	13726014	13726015	1	LOC_Os12g24120
Deletion	Chr5	13910990	13910992	2
Deletion	Chr7	14140991	14140996	5
Deletion	Chr12	14357097	14357098	1
Deletion	Chr11	14447008	14447009	1
Deletion	Chr2	14917430	14917451	21
Deletion	Chr8	14952447	14952448	1
Deletion	Chr5	14975079	14975115	36
Deletion	Chr2	15088898	15088899	1
Deletion	Chr6	15437108	15437262	154
Deletion	Chr1	15530854	15530866	12
Deletion	Chr10	15534467	15534489	22
Deletion	Chr4	15697810	15697811	1
Deletion	Chr9	16234137	16234138	1
Deletion	Chr4	17143631	17143654	23
Deletion	Chr12	17178822	17178823	1
Deletion	Chr5	17610321	17610428	107
Deletion	Chr8	17930679	17930680	1
Deletion	Chr12	18199282	18199283	1
Deletion	Chr7	18567912	18567913	1
Deletion	Chr4	18576921	18576922	1
Deletion	Chr8	18715084	18715085	1
Deletion	Chr4	19750638	19750639	1
Deletion	Chr7	19804745	19804752	7	LOC_Os07g33170
Deletion	Chr3	19856370	19856379	9
Deletion	Chr1	20070469	20070482	13	LOC_Os01g36250
Deletion	Chr9	20171638	20171670	32
Deletion	Chr1	20426216	20426217	1
Deletion	Chr12	20599564	20599574	10
Deletion	Chr4	20748672	20748673	1
Deletion	Chr5	20839914	20839915	1	LOC_Os05g35100
Deletion	Chr1	20840615	20840800	185
Deletion	Chr8	21147069	21147072	3
Deletion	Chr8	21201494	21201497	3	LOC_Os08g33870
Deletion	Chr4	22739525	22739526	1
Deletion	Chr12	22891160	22891162	2
Deletion	Chr5	23265857	23265859	2
Deletion	Chr1	23424765	23424766	1
Deletion	Chr2	23617523	23617524	1
Deletion	Chr6	24116737	24116738	1	LOC_Os06g40480
Deletion	Chr6	24164740	24164741	1
Deletion	Chr5	24701817	24701819	2
Deletion	Chr1	25395001	25411000	15999
Deletion	Chr5	26266395	26266396	1
Deletion	Chr4	26415072	26415073	1
Deletion	Chr12	26886516	26886530	14
Deletion	Chr6	27132288	27132289	1
Deletion	Chr3	27799147	27799148	1
Deletion	Chr8	28232745	28232748	3
Deletion	Chr6	29548862	29548863	1
Deletion	Chr4	29926613	29926617	4
Deletion	Chr2	30256809	30256811	2
Deletion	Chr3	30434943	30434944	1
Deletion	Chr2	31580563	31580631	68
Deletion	Chr3	31641144	31641146	2
Deletion	Chr4	31870252	31870253	1
Deletion	Chr1	32215709	32215710	1
Deletion	Chr1	35281004	35281005	1

Insertions: 90

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13740009	13740009	1
Insertion	Chr1	15752577	15752577	1
Insertion	Chr1	19823851	19823936	86
Insertion	Chr1	24651711	24651715	5
Insertion	Chr1	29415898	29415899	2
Insertion	Chr1	29861764	29861769	6	LOC_Os01g51950
Insertion	Chr1	38346317	38346317	1
Insertion	Chr10	15091382	15091382	1
Insertion	Chr10	1625407	1625409	3
Insertion	Chr10	3244889	3244889	1
Insertion	Chr10	3245048	3245048	1
Insertion	Chr10	5025523	5025523	1
Insertion	Chr10	5052218	5052231	14	LOC_Os10g09350
Insertion	Chr10	6438571	6438571	1
Insertion	Chr11	10284003	10284003	1
Insertion	Chr11	10867323	10867323	1
Insertion	Chr11	22107950	22107961	12	LOC_Os11g37430
Insertion	Chr11	23459130	23459130	1
Insertion	Chr11	2651684	2651684	1
Insertion	Chr11	5721701	5721702	2
Insertion	Chr11	996012	996012	1
Insertion	Chr12	10315562	10315562	1
Insertion	Chr12	10915936	10915936	1
Insertion	Chr12	13132434	13132434	1
Insertion	Chr12	13921592	13921594	3
Insertion	Chr12	20723881	20723882	2
Insertion	Chr12	2115006	2115006	1
Insertion	Chr12	21643961	21643962	2
Insertion	Chr12	23996885	23996886	2	LOC_Os12g39010
Insertion	Chr2	32364760	32364760	1
Insertion	Chr2	34103499	34103500	2
Insertion	Chr3	13537845	13537846	2
Insertion	Chr3	17656146	17656146	1
Insertion	Chr3	19853869	19853874	6	LOC_Os03g35830
Insertion	Chr3	34698635	34698636	2
Insertion	Chr3	35366795	35366795	1
Insertion	Chr4	10461352	10461353	2
Insertion	Chr4	1919348	1919348	1
Insertion	Chr4	1943386	1943386	1
Insertion	Chr4	24563484	24563543	60
Insertion	Chr4	5754611	5754617	7
Insertion	Chr5	10431881	10431881	1
Insertion	Chr5	10467225	10467225	1
Insertion	Chr5	11102261	11102262	2
Insertion	Chr5	11570070	11570070	1
Insertion	Chr5	12748126	12748126	1
Insertion	Chr5	18211436	18211438	3	LOC_Os05g31330
Insertion	Chr5	27538311	27538323	13
Insertion	Chr5	8548172	8548172	1
Insertion	Chr5	9666851	9666851	1
Insertion	Chr6	10988813	10988813	1
Insertion	Chr6	13880584	13880586	3
Insertion	Chr6	16242922	16242922	1
Insertion	Chr6	17621866	17621866	1
Insertion	Chr6	19215709	19215709	1
Insertion	Chr6	19537029	19537029	1
Insertion	Chr6	23060582	23060583	2
Insertion	Chr6	2677592	2677592	1
Insertion	Chr6	28607046	28607071	26
Insertion	Chr6	30234244	30234244	1
Insertion	Chr6	4130423	4130426	4
Insertion	Chr6	5789500	5789501	2
Insertion	Chr7	17813428	17813430	3
Insertion	Chr7	17839585	17839633	49
Insertion	Chr7	17892522	17892522	1	LOC_Os07g30270
Insertion	Chr7	230667	230667	1	LOC_Os07g01360
Insertion	Chr7	23579390	23579390	1
Insertion	Chr7	26764375	26764375	1
Insertion	Chr7	27282369	27282370	2
Insertion	Chr7	28036857	28036858	2
Insertion	Chr7	28603125	28603125	1
Insertion	Chr7	9846175	9846175	1
Insertion	Chr7	9954405	9954405	1
Insertion	Chr8	11615568	11615568	1
Insertion	Chr8	11618149	11618149	1
Insertion	Chr8	12587677	12587677	1
Insertion	Chr8	13012161	13012161	1	LOC_Os08g21710
Insertion	Chr8	14246253	14246253	1
Insertion	Chr8	16263145	16263206	62
Insertion	Chr8	17952544	17952549	6
Insertion	Chr8	25145611	25145651	41
Insertion	Chr8	7011702	7011702	1
Insertion	Chr8	7384142	7384143	2
Insertion	Chr9	14267673	14267673	1	LOC_Os09g23920
Insertion	Chr9	1938869	1938870	2	LOC_Os09g03820
Insertion	Chr9	2935867	2935867	1
Insertion	Chr9	4862084	4862084	1
Insertion	Chr9	514519	514521	3
Insertion	Chr9	5748486	5748486	1
Insertion	Chr9	783925	783925	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr6	19325169	19860118
Inversion	Chr6	22487389	22520889
Inversion	Chr6	27934952	27935548
Inversion	Chr7	28478449	28478624

Translocations: 39

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	321752	Chr11	305583
Translocation	Chr9	2321508	Chr4	12931321
Translocation	Chr11	4452873	Chr2	30921387
Translocation	Chr8	4909193	Chr2	17732032	LOC_Os08g08520
Translocation	Chr11	5197570	Chr3	105984
Translocation	Chr12	6032542	Chr4	5469828	LOC_Os12g11200
Translocation	Chr10	6618992	Chr6	13457409	2
Translocation	Chr7	7327466	Chr2	476260
Translocation	Chr5	7532986	Chr1	22601305
Translocation	Chr6	7782065	Chr1	32154717
Translocation	Chr10	9076230	Chr6	16342071
Translocation	Chr5	9255423	Chr4	16054484
Translocation	Chr10	9912215	Chr2	32908783	LOC_Os02g53740
Translocation	Chr8	10034546	Chr1	17844084
Translocation	Chr12	10043726	Chr9	9544629	LOC_Os09g15639
Translocation	Chr9	10395548	Chr8	1219436
Translocation	Chr10	10616114	Chr4	11307792
Translocation	Chr7	11077835	Chr4	29420506	LOC_Os04g49290
Translocation	Chr7	11168859	Chr2	18525530	LOC_Os07g18860
Translocation	Chr10	12643396	Chr8	7530758
Translocation	Chr6	13715388	Chr4	25851337
Translocation	Chr11	14496676	Chr4	3485596
Translocation	Chr12	16085025	Chr6	5454630
Translocation	Chr9	16737773	Chr7	1125457
Translocation	Chr4	16774078	Chr1	31955373
Translocation	Chr7	17245231	Chr2	26403903	LOC_Os07g29360
Translocation	Chr7	21174152	Chr4	8324312
Translocation	Chr10	21529646	Chr7	18936784
Translocation	Chr6	22249449	Chr4	20828281
Translocation	Chr5	26005973	Chr1	33854335	2
Translocation	Chr11	26698392	Chr2	18311085
Translocation	Chr2	27133113	Chr1	25821321
Translocation	Chr11	27417015	Chr6	24472735
Translocation	Chr4	27580126	Chr1	36209600
Translocation	Chr11	28267919	Chr3	31985112	LOC_Os11g47039
Translocation	Chr8	28403330	Chr7	4246476
Translocation	Chr11	28681192	Chr4	575619
Translocation	Chr11	29010108	Chr3	31102190
Translocation	Chr4	32281526	Chr3	21730909	LOC_Os03g39110

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