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Mutant Information

Mutant Name	FN3248-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3248-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25418134	C-A	HOMO	INTRON
SBS	Chr10	12361220	C-T	HET	INTRON
SBS	Chr11	518555	C-T	HOMO	INTERGENIC
SBS	Chr11	8239495	C-T	HOMO	INTERGENIC
SBS	Chr12	12068757	G-A	HET	INTERGENIC
SBS	Chr12	16828399	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28470
SBS	Chr2	15336760	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g26100
SBS	Chr2	22872844	T-A	HET	STOP_GAINED	LOC_Os02g37856
SBS	Chr2	31095157	T-A	HET	INTERGENIC
SBS	Chr2	34533100	C-T	HOMO	INTRON
SBS	Chr2	9810243	A-G	HOMO	INTRON
SBS	Chr3	29321548	G-A	HET	INTERGENIC
SBS	Chr3	6882163	C-T	HET	INTERGENIC
SBS	Chr4	5188344	G-A	HET	INTERGENIC
SBS	Chr6	120252	C-T	HOMO	INTERGENIC
SBS	Chr6	16850956	G-A	HOMO	INTERGENIC
SBS	Chr8	27982629	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g44490
SBS	Chr9	8530445	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g14430

Deletions: 125

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	30197	30549	352
Deletion	Chr9	106441	106442	1
Deletion	Chr2	212723	212725	2
Deletion	Chr2	233169	233170	1	LOC_Os02g01390
Deletion	Chr5	682769	682770	1
Deletion	Chr3	1392150	1392152	2
Deletion	Chr8	1444754	1444755	1
Deletion	Chr1	1820204	1820207	3	LOC_Os01g04140
Deletion	Chr9	1946593	1946594	1
Deletion	Chr1	2008374	2008375	1
Deletion	Chr2	2049139	2049142	3
Deletion	Chr8	2049740	2049741	1
Deletion	Chr4	2633535	2633536	1
Deletion	Chr2	2707908	2707979	71
Deletion	Chr4	3362036	3362038	2
Deletion	Chr10	3386842	3386908	66
Deletion	Chr3	3707272	3707273	1
Deletion	Chr5	3997276	3997277	1
Deletion	Chr8	4370741	4370742	1
Deletion	Chr9	4517139	4517140	1
Deletion	Chr5	4521173	4521174	1
Deletion	Chr1	4787551	4787552	1
Deletion	Chr10	5024451	5024480	29
Deletion	Chr8	5195722	5195723	1
Deletion	Chr4	5348461	5348465	4
Deletion	Chr5	5438040	5438042	2
Deletion	Chr4	5455958	5455959	1
Deletion	Chr8	5495747	5495748	1
Deletion	Chr4	5510393	5510411	18	LOC_Os04g10190
Deletion	Chr9	5754991	5754992	1
Deletion	Chr7	6159345	6159346	1
Deletion	Chr5	6620034	6620060	26
Deletion	Chr10	6821333	6821334	1
Deletion	Chr10	7004734	7004737	3	LOC_Os10g12570
Deletion	Chr10	7190781	7190784	3	LOC_Os10g13320
Deletion	Chr5	7540094	7540112	18
Deletion	Chr1	7898139	7898221	82
Deletion	Chr5	7898988	7898990	2
Deletion	Chr10	8096360	8096450	90
Deletion	Chr10	9142666	9142667	1
Deletion	Chr10	9143935	9143938	3	LOC_Os10g18042
Deletion	Chr8	9162053	9162066	13
Deletion	Chr11	10024566	10024568	2
Deletion	Chr7	10836465	10836466	1
Deletion	Chr10	10959300	10959301	1
Deletion	Chr11	10995148	10995150	2	LOC_Os11g19230
Deletion	Chr4	11145276	11145279	3	LOC_Os04g19990
Deletion	Chr4	11152005	11152060	55
Deletion	Chr9	11328800	11328801	1
Deletion	Chr1	11398181	11398183	2
Deletion	Chr6	11425551	11425552	1
Deletion	Chr12	11487340	11487341	1	LOC_Os12g19720
Deletion	Chr5	11604566	11604567	1
Deletion	Chr8	11637046	11637062	16
Deletion	Chr1	12180234	12180235	1
Deletion	Chr1	12473482	12473483	1
Deletion	Chr4	12527674	12527675	1
Deletion	Chr5	12606746	12606747	1
Deletion	Chr12	12748236	12748262	26	LOC_Os12g22590
Deletion	Chr1	12951506	12951507	1
Deletion	Chr8	13096380	13096381	1
Deletion	Chr8	13578865	13578917	52
Deletion	Chr4	13728895	13728896	1	2
Deletion	Chr6	13770352	13770354	2
Deletion	Chr8	13799011	13799012	1
Deletion	Chr8	13807996	13807997	1
Deletion	Chr7	14012509	14012511	2
Deletion	Chr9	14121999	14122001	2
Deletion	Chr1	14254043	14254074	31
Deletion	Chr5	14559802	14559803	1
Deletion	Chr7	14974925	14974926	1
Deletion	Chr8	15298518	15298519	1
Deletion	Chr12	15425789	15425790	1	LOC_Os12g26400
Deletion	Chr4	15697413	15697424	11
Deletion	Chr11	16017827	16017828	1
Deletion	Chr1	16090567	16090570	3
Deletion	Chr12	16274661	16274662	1
Deletion	Chr9	16373604	16373605	1
Deletion	Chr11	16518111	16518112	1
Deletion	Chr11	16553034	16553037	3
Deletion	Chr1	16644005	16644008	3
Deletion	Chr11	16715081	16715085	4
Deletion	Chr6	16760304	16760307	3
Deletion	Chr1	16773079	16773080	1
Deletion	Chr10	16889108	16889109	1
Deletion	Chr8	17025543	17025544	1
Deletion	Chr3	17308988	17308989	1
Deletion	Chr8	17546388	17546389	1
Deletion	Chr3	17955681	17955747	66
Deletion	Chr9	18079311	18079334	23	LOC_Os09g29730
Deletion	Chr9	18081938	18081939	1
Deletion	Chr4	18433001	18450000	16999	2
Deletion	Chr2	18944577	18944578	1
Deletion	Chr1	19487736	19487809	73
Deletion	Chr12	19501223	19501225	2
Deletion	Chr1	19586970	19586971	1
Deletion	Chr5	19604027	19604028	1	LOC_Os05g33370
Deletion	Chr12	19773460	19773462	2
Deletion	Chr5	19861395	19861396	1
Deletion	Chr2	20642518	20642519	1	LOC_Os02g34450
Deletion	Chr11	20914642	20914643	1
Deletion	Chr5	21031185	21031256	71
Deletion	Chr12	21069314	21069315	1
Deletion	Chr11	21225747	21225749	2
Deletion	Chr7	21452372	21452373	1
Deletion	Chr2	21628696	21628698	2	LOC_Os02g36010
Deletion	Chr8	22073984	22073985	1
Deletion	Chr11	22392417	22392418	1
Deletion	Chr6	22790212	22790214	2
Deletion	Chr4	24701280	24701284	4	LOC_Os04g41660
Deletion	Chr6	25377805	25377810	5
Deletion	Chr1	26382072	26382073	1
Deletion	Chr12	26403195	26403197	2
Deletion	Chr5	26433924	26433927	3
Deletion	Chr12	26542753	26542754	1
Deletion	Chr12	26832904	26832905	1	LOC_Os12g43230
Deletion	Chr11	27379330	27379339	9	LOC_Os11g45240
Deletion	Chr3	27528813	27528829	16
Deletion	Chr3	28218060	28218061	1
Deletion	Chr4	28946449	28946450	1
Deletion	Chr5	29180296	29180302	6
Deletion	Chr6	30156123	30156125	2
Deletion	Chr4	31709157	31709158	1
Deletion	Chr4	32262548	32262581	33
Deletion	Chr4	35228248	35228249	1

Insertions: 107

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13741222	13741222	1
Insertion	Chr1	13765384	13765385	2
Insertion	Chr1	15748933	15748933	1
Insertion	Chr1	16852109	16852116	8
Insertion	Chr1	19490438	19490440	3	LOC_Os01g35210
Insertion	Chr1	19523854	19523857	4
Insertion	Chr1	20487038	20487038	1
Insertion	Chr1	21327368	21327368	1
Insertion	Chr1	23420341	23420341	1
Insertion	Chr1	27444412	27444412	1
Insertion	Chr1	31465503	31465503	1
Insertion	Chr1	36853199	36853200	2
Insertion	Chr1	36889276	36889277	2
Insertion	Chr1	3794628	3794629	2
Insertion	Chr10	1254945	1254945	1
Insertion	Chr10	12849436	12849437	2
Insertion	Chr10	15179776	15179776	1
Insertion	Chr10	5104974	5104974	1
Insertion	Chr10	7181276	7181277	2
Insertion	Chr10	8733041	8733041	1	LOC_Os10g17340
Insertion	Chr11	20201694	20201698	5
Insertion	Chr11	27830603	27830606	4
Insertion	Chr11	28585656	28585689	34
Insertion	Chr11	9979902	9979902	1
Insertion	Chr12	12111714	12111714	1
Insertion	Chr12	12616516	12616516	1
Insertion	Chr12	14632611	14632637	27	LOC_Os12g25360
Insertion	Chr12	18144669	18144669	1
Insertion	Chr12	20407378	20407382	5
Insertion	Chr12	21603178	21603210	33
Insertion	Chr12	23365140	23365143	4
Insertion	Chr12	25786377	25786377	1
Insertion	Chr12	5322117	5322117	1
Insertion	Chr12	7861029	7861029	1
Insertion	Chr12	9721026	9721026	1
Insertion	Chr2	12254823	12254824	2
Insertion	Chr2	13479110	13479128	19
Insertion	Chr2	14767637	14767637	1	LOC_Os02g25330
Insertion	Chr2	18680854	18680854	1	LOC_Os02g31190
Insertion	Chr2	19722828	19722834	7
Insertion	Chr2	21712057	21712058	2
Insertion	Chr2	21913119	21913119	1	LOC_Os02g36290
Insertion	Chr2	7458562	7458566	5
Insertion	Chr2	9354444	9354444	1
Insertion	Chr3	13209063	13209063	1
Insertion	Chr3	18907122	18907123	2
Insertion	Chr3	19102222	19102225	4
Insertion	Chr3	2456232	2456237	6
Insertion	Chr3	28500708	28500718	11
Insertion	Chr3	35505770	35505770	1
Insertion	Chr3	36408469	36408470	2
Insertion	Chr3	823631	823634	4	LOC_Os03g02350
Insertion	Chr4	10491365	10491366	2
Insertion	Chr4	13728895	13728895	1	2
Insertion	Chr4	14413256	14413256	1
Insertion	Chr4	1729130	1729131	2
Insertion	Chr4	20755843	20755843	1
Insertion	Chr4	2349290	2349290	1	LOC_Os04g04880
Insertion	Chr4	2724297	2724297	1
Insertion	Chr4	3005728	3005728	1
Insertion	Chr4	3272698	3272703	6
Insertion	Chr4	3853765	3853767	3	LOC_Os04g07260
Insertion	Chr5	10106087	10106087	1
Insertion	Chr5	11217752	11217752	1
Insertion	Chr5	12568685	12568753	69
Insertion	Chr5	15435989	15435992	4
Insertion	Chr5	19007447	19007513	67
Insertion	Chr5	2040198	2040198	1
Insertion	Chr5	2429594	2429594	1	LOC_Os05g05000
Insertion	Chr5	25602269	25602269	1
Insertion	Chr5	2808568	2808571	4
Insertion	Chr5	4954541	4954546	6
Insertion	Chr5	5593266	5593318	53
Insertion	Chr5	8194568	8194568	1
Insertion	Chr5	8774912	8774912	1
Insertion	Chr6	10294224	10294224	1
Insertion	Chr6	12518358	12518358	1
Insertion	Chr6	13904097	13904098	2
Insertion	Chr6	14042087	14042091	5
Insertion	Chr6	15083983	15083986	4
Insertion	Chr6	23090979	23090979	1	LOC_Os06g38920
Insertion	Chr6	29300028	29300058	31
Insertion	Chr7	16841968	16842003	36	LOC_Os07g28770
Insertion	Chr7	27597848	27597850	3
Insertion	Chr7	7461902	7461902	1
Insertion	Chr7	9802103	9802103	1
Insertion	Chr7	9954189	9954189	1
Insertion	Chr8	13595702	13595702	1
Insertion	Chr8	15818195	15818195	1
Insertion	Chr8	17507637	17507647	11
Insertion	Chr8	17582030	17582030	1
Insertion	Chr8	20957028	20957028	1
Insertion	Chr8	24362510	24362510	1
Insertion	Chr8	26662495	26662495	1
Insertion	Chr8	26718688	26718689	2
Insertion	Chr8	6938082	6938083	2
Insertion	Chr8	7266096	7266097	2
Insertion	Chr8	7313746	7313746	1
Insertion	Chr9	16373313	16373315	3
Insertion	Chr9	17785615	17785615	1
Insertion	Chr9	18633431	18633432	2
Insertion	Chr9	3286018	3286018	1
Insertion	Chr9	4855689	4855690	2
Insertion	Chr9	5354976	5354976	1
Insertion	Chr9	6695975	6695988	14
Insertion	Chr9	7426700	7426700	1
Insertion	Chr9	8474198	8474198	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6641179	6655804

Translocations: 26

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	301058	Chr3	12783338	LOC_Os03g22300
Translocation	Chr9	681291	Chr3	24404315	LOC_Os09g01980
Translocation	Chr9	682399	Chr2	11074026	2
Translocation	Chr4	729097	Chr3	31273134
Translocation	Chr4	2085445	Chr1	27847846
Translocation	Chr9	6280172	Chr6	20090155
Translocation	Chr7	8834473	Chr5	10239419
Translocation	Chr12	8840829	Chr9	20497358
Translocation	Chr3	9428792	Chr1	16513483
Translocation	Chr7	9666167	Chr4	14117299
Translocation	Chr12	9879033	Chr10	327477
Translocation	Chr11	11559601	Chr4	11340018
Translocation	Chr10	12685695	Chr9	1170880
Translocation	Chr11	12810740	Chr5	8349916
Translocation	Chr8	15300256	Chr2	20643804	LOC_Os02g34450
Translocation	Chr11	15339318	Chr3	15104040
Translocation	Chr10	15557603	Chr4	15030348
Translocation	Chr11	18646856	Chr2	19207247
Translocation	Chr10	19398743	Chr8	19810927
Translocation	Chr11	20175274	Chr2	20082593	LOC_Os02g33680
Translocation	Chr10	22644181	Chr8	19749033
Translocation	Chr6	22703991	Chr3	10562565
Translocation	Chr4	23032051	Chr3	22887559
Translocation	Chr3	24403711	Chr2	11073643	LOC_Os02g18954
Translocation	Chr7	27359823	Chr5	12027449	LOC_Os05g20490
Translocation	Chr4	33111949	Chr2	8784450	LOC_Os04g55620

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