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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6601948	G-A	HET	INTERGENIC
SBS	Chr1	19690203	A-T	HET	INTRON
SBS	Chr2	1894129	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g04290
SBS	Chr3	2313072	C-T	HET	INTERGENIC
SBS	Chr3	5257001	C-T	HOMO	INTERGENIC
SBS	Chr3	7445159	C-T	HOMO	INTERGENIC
SBS	Chr3	15638923	C-T	HET	INTRON
SBS	Chr3	15638926	A-C	HET	INTRON
SBS	Chr3	20152503	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36330
SBS	Chr3	21962625	T-C	HET	INTERGENIC
SBS	Chr3	25286380	A-G	HET	START_GAINED
SBS	Chr3	26298849	G-C	HET	INTERGENIC
SBS	Chr4	4641767	G-A	HET	INTERGENIC
SBS	Chr4	9626315	G-A	HOMO	INTERGENIC
SBS	Chr5	13982992	T-C	HET	INTERGENIC
SBS	Chr5	14800674	C-T	HET	INTERGENIC
SBS	Chr5	29401436	G-T	HET	INTERGENIC
SBS	Chr7	815322	T-C	HET	INTRON
SBS	Chr7	11183551	G-T	HET	INTERGENIC
SBS	Chr7	17063107	G-A	HET	INTERGENIC
SBS	Chr7	19285974	G-A	HET	SPLICE_SITE_REGION
SBS	Chr7	23468177	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g39170
SBS	Chr8	912597	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	5194750	G-A	HOMO	INTERGENIC
SBS	Chr8	6452147	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10940
SBS	Chr8	16907251	T-A	HOMO	INTRON
SBS	Chr8	16989049	G-A	HOMO	INTRON
SBS	Chr10	1575290	G-A	HET	INTERGENIC
SBS	Chr10	12066617	A-G	HOMO	INTERGENIC
SBS	Chr10	12736440	T-G	HOMO	INTERGENIC
SBS	Chr10	17611116	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g33440
SBS	Chr10	19429108	G-A	HET	INTERGENIC
SBS	Chr11	19875314	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34020
SBS	Chr12	3052036	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06370
SBS	Chr12	3446330	A-G	HET	INTERGENIC
SBS	Chr12	20343187	C-G	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	747415	747416	1
Deletion	Chr8	775260	775302	42
Deletion	Chr3	2184705	2184706	1
Deletion	Chr7	2527216	2527218	2
Deletion	Chr11	5805604	5805616	12	LOC_Os11g10580
Deletion	Chr11	7937785	7937798	13
Deletion	Chr12	9058987	9058988	1
Deletion	Chr7	9747416	9747439	23
Deletion	Chr8	9919555	9919561	6	LOC_Os08g16255
Deletion	Chr5	10539001	10563000	23999	5
Deletion	Chr9	13180263	13180274	11
Deletion	Chr11	14426017	14426025	8
Deletion	Chr9	16988835	16988841	6
Deletion	Chr12	17457969	17457970	1
Deletion	Chr5	23591730	23591735	5
Deletion	Chr3	26167183	26167187	4
Deletion	Chr4	26544893	26544909	16	LOC_Os04g44840
Deletion	Chr2	27522001	27560000	37999	4
Deletion	Chr5	28257267	28257272	5
Deletion	Chr2	29409010	29409011	1
Deletion	Chr3	30631112	30631126	14
Deletion	Chr3	31360911	31360912	1
Deletion	Chr2	33516005	33516022	17	LOC_Os02g54730
Deletion	Chr3	35979172	35979183	11

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	5659649	5659652	4
Insertion	Chr4	7655009	7655009	1
Insertion	Chr1	26358733	26358771	39
Insertion	Chr2	26485504	26485527	24
Insertion	Chr7	24240076	24240106	31
Insertion	Chr8	5028140	5028147	8
Insertion	Chr11	26003496	26003538	43
Insertion	Chr12	22243474	22243474	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11309324	11388518
Inversion	Chr1	11309351	11388522
Inversion	Chr10	16018075	16018376	LOC_Os10g30750
Inversion	Chr1	21648605	21799906	LOC_Os01g38540
Inversion	Chr6	30055046	30055242

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	12635249	Chr1	26030492

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