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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29216559	G-A	HET	INTERGENIC
SBS	Chr1	31154623	G-T	HET	INTERGENIC
SBS	Chr1	31155066	A-T	HET	INTERGENIC
SBS	Chr1	37643000	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g64840
SBS	Chr10	17931685	A-C	HET	INTERGENIC
SBS	Chr10	18652737	T-C	HET	INTERGENIC
SBS	Chr10	5972745	A-C	HET	INTERGENIC
SBS	Chr11	11917205	C-T	HET	INTRON
SBS	Chr11	11926971	T-C	HET	INTERGENIC
SBS	Chr11	14044299	G-A	HET	INTRON
SBS	Chr11	8533037	C-T	HET	INTERGENIC
SBS	Chr12	18234099	C-T	HET	INTERGENIC
SBS	Chr12	9721090	T-A	HET	INTERGENIC
SBS	Chr12	9721091	C-A	HET	INTERGENIC
SBS	Chr2	32005877	T-C	HET	INTERGENIC
SBS	Chr3	18789240	T-C	HET	INTERGENIC
SBS	Chr3	19427196	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g34090
SBS	Chr3	21020102	G-C	HET	UTR_3_PRIME
SBS	Chr3	27766264	G-A	HET	INTRON
SBS	Chr3	31003895	G-A	HET	INTERGENIC
SBS	Chr3	34720459	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	11625701	T-A	HOMO	INTERGENIC
SBS	Chr4	19540367	T-A	HOMO	INTERGENIC
SBS	Chr5	2662877	T-C	HET	INTERGENIC
SBS	Chr5	2662878	C-A	HET	INTERGENIC
SBS	Chr5	27381212	T-A	HET	INTRON
SBS	Chr5	3210590	A-C	HET	INTRON
SBS	Chr6	13577251	T-G	HET	INTRON
SBS	Chr6	17693030	A-G	HOMO	INTERGENIC
SBS	Chr6	20803549	T-C	HOMO	INTERGENIC
SBS	Chr7	19809059	C-T	HET	INTERGENIC
SBS	Chr7	8562236	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14940
SBS	Chr8	25303806	C-T	HET	INTERGENIC
SBS	Chr8	7293363	C-A	HET	INTERGENIC
SBS	Chr8	872750	T-C	HET	INTERGENIC
SBS	Chr9	1462236	G-A	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	306066	306067	1
Deletion	Chr1	761447	761512	65	LOC_Os01g02380
Deletion	Chr2	1705357	1705368	11
Deletion	Chr11	2914001	2924000	9999	LOC_Os11g10820
Deletion	Chr10	3278568	3278569	1
Deletion	Chr8	5912934	5912942	8
Deletion	Chr9	7291693	7291790	97
Deletion	Chr4	7295544	7295550	6
Deletion	Chr4	8605174	8605218	44
Deletion	Chr9	9684023	9684024	1
Deletion	Chr6	9810369	9810376	7
Deletion	Chr9	11086218	11086265	47
Deletion	Chr2	11449152	11449153	1
Deletion	Chr8	12737280	12737283	3
Deletion	Chr9	15181692	15181720	28
Deletion	Chr3	16232252	16232316	64
Deletion	Chr9	16583962	16583971	9
Deletion	Chr12	17891911	17891917	6
Deletion	Chr12	18058519	18058520	1
Deletion	Chr8	20307392	20307438	46
Deletion	Chr12	21379901	21379902	1
Deletion	Chr4	23247001	23267000	19999	LOC_Os01g01689
Deletion	Chr1	25822942	25822990	48
Deletion	Chr12	26328755	26328756	1
Deletion	Chr11	27240768	27240771	3
Deletion	Chr1	34070001	34367000	296999	46
Deletion	Chr1	41615885	41615886	1

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2207959	2207997	39
Insertion	Chr11	21379748	21379749	2
Insertion	Chr12	23132350	23132359	10
Insertion	Chr2	20504990	20504990	1
Insertion	Chr2	28503957	28503957	1
Insertion	Chr3	21032747	21032793	47
Insertion	Chr3	6964037	6964037	1
Insertion	Chr4	16920537	16920537	1
Insertion	Chr6	13982283	13982283	1
Insertion	Chr7	18889188	18889188	1
Insertion	Chr7	20458006	20458009	4
Insertion	Chr7	223685	223685	1
Insertion	Chr8	14458464	14458464	1
Insertion	Chr9	16188886	16188886	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4865403	5051634	LOC_Os02g09790
Inversion	Chr2	7702621	8081622
Inversion	Chr2	7702631	8081632
Inversion	Chr10	19162984	19308722
Inversion	Chr7	25245647	25245995
Inversion	Chr1	33863046	34070968
Inversion	Chr1	33866149	34382579

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7057134	Chr1	31953047
Translocation	Chr12	13966747	Chr1	19217180
Translocation	Chr11	24413996	Chr5	5542130
Translocation	Chr11	27384608	Chr3	33184708	LOC_Os11g45250
Translocation	Chr11	27384802	Chr3	33184707	2

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