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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17534472	A-C	HET	INTERGENIC
SBS	Chr1	33490408	A-G	HET	SYNONYMOUS_CODING
SBS	Chr1	36321406	C-T	HET	INTERGENIC
SBS	Chr1	6952212	A-G	HOMO	INTERGENIC
SBS	Chr1	7867237	T-A	HOMO	INTRON
SBS	Chr10	17308209	T-A	HET	INTERGENIC
SBS	Chr10	2010528	T-A	HOMO	INTERGENIC
SBS	Chr11	23035456	C-A	HET	INTERGENIC
SBS	Chr12	12908864	G-A	HET	INTERGENIC
SBS	Chr12	13356589	C-T	HET	INTERGENIC
SBS	Chr12	17721754	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29700
SBS	Chr2	26112580	G-A	HET	INTERGENIC
SBS	Chr2	31904650	G-T	HET	INTERGENIC
SBS	Chr2	6598627	C-T	HET	INTERGENIC
SBS	Chr3	17158642	G-T	HOMO	INTERGENIC
SBS	Chr3	28065548	C-A	HET	INTERGENIC
SBS	Chr3	35921169	G-C	HET	INTERGENIC
SBS	Chr3	7069611	A-G	HET	SYNONYMOUS_CODING
SBS	Chr4	17553065	C-T	HOMO	INTERGENIC
SBS	Chr4	28075367	A-G	HET	INTERGENIC
SBS	Chr4	33093238	T-C	HET	INTERGENIC
SBS	Chr4	8164544	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14560
SBS	Chr5	1938948	G-A	HET	INTERGENIC
SBS	Chr5	962219	G-A	HOMO	INTERGENIC
SBS	Chr6	226631	T-A	HOMO	INTERGENIC
SBS	Chr7	135153	T-A	HET	INTRON
SBS	Chr7	19589071	T-C	HET	INTERGENIC
SBS	Chr7	21733076	G-A	HET	INTERGENIC
SBS	Chr7	29565442	C-T	HET	INTERGENIC
SBS	Chr7	4839500	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g09230
SBS	Chr8	2938704	A-C	HET	INTRON
SBS	Chr8	8774924	G-T	HET	INTERGENIC
SBS	Chr9	4875068	G-T	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1104389	1104390	1
Deletion	Chr4	1927135	1927138	3
Deletion	Chr6	3138918	3138922	4
Deletion	Chr11	3710485	3710492	7
Deletion	Chr10	3994489	3994501	12
Deletion	Chr3	5568561	5568562	1
Deletion	Chr6	5841001	5882000	40999	7
Deletion	Chr6	5895001	5959000	63999	11
Deletion	Chr3	6035796	6035803	7
Deletion	Chr6	6358506	6358539	33	LOC_Os06g11940
Deletion	Chr8	13754870	13754875	5
Deletion	Chr2	16439674	16439675	1
Deletion	Chr9	17388407	17388414	7	LOC_Os09g28570
Deletion	Chr8	18696966	18696991	25
Deletion	Chr12	19002006	19002008	2
Deletion	Chr12	20370163	20370197	34
Deletion	Chr3	21160586	21160593	7
Deletion	Chr6	24925476	24925477	1
Deletion	Chr2	26192053	26192074	21	LOC_Os02g43400
Deletion	Chr2	27649584	27649585	1
Deletion	Chr7	28614001	28793000	178999	29
Deletion	Chr7	28803001	28909000	105999	14
Deletion	Chr4	29060538	29060548	10
Deletion	Chr7	29086688	29086689	1
Deletion	Chr6	29331621	29331624	3
Deletion	Chr1	30408366	30408377	11	LOC_Os01g52880

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	6921967	6921967	1
Insertion	Chr11	16027391	16027393	3	LOC_Os11g27850
Insertion	Chr12	16686031	16686050	20
Insertion	Chr2	1505931	1505940	10
Insertion	Chr2	17799163	17799163	1	LOC_Os02g29950
Insertion	Chr2	27792546	27792547	2
Insertion	Chr7	27227738	27227738	1
Insertion	Chr7	7179441	7179442	2
Insertion	Chr8	20767372	20767372	1
Insertion	Chr8	3125102	3125103	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	13798777	13798957
Inversion	Chr10	17611594	18372239	LOC_Os10g34430
Inversion	Chr10	17611596	18372240	LOC_Os10g34430
Inversion	Chr7	28209227	28596970	LOC_Os07g47870
Inversion	Chr7	28209257	28907222	LOC_Os07g48360

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	688756	Chr9	16008988
Translocation	Chr9	1610261	Chr6	20279832
Translocation	Chr11	15311816	Chr3	27255702	LOC_Os03g47940

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