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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16316277	T-C	HET	INTERGENIC
SBS	Chr1	26563573	G-A	HOMO	INTERGENIC
SBS	Chr1	41322729	G-A	HET	INTERGENIC
SBS	Chr11	15545622	T-A	HET	INTERGENIC
SBS	Chr11	16992216	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29300
SBS	Chr11	20284298	T-G	HET	INTERGENIC
SBS	Chr11	2097945	A-T	HOMO	INTRON
SBS	Chr11	22363054	C-T	HET	INTERGENIC
SBS	Chr11	26817301	G-A	HET	INTERGENIC
SBS	Chr12	13848988	A-C	HET	INTERGENIC
SBS	Chr12	21241887	T-C	HET	INTRON
SBS	Chr12	24078426	G-T	HET	INTRON
SBS	Chr12	4711779	A-T	HOMO	INTERGENIC
SBS	Chr2	13386087	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g22410
SBS	Chr2	30159574	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g49360
SBS	Chr2	32398787	C-T	HET	INTERGENIC
SBS	Chr2	35734030	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g58430
SBS	Chr3	36204771	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g64070
SBS	Chr4	10517118	T-G	HET	INTERGENIC
SBS	Chr4	13561004	A-G	HOMO	INTERGENIC
SBS	Chr5	12270422	C-A	HOMO	INTERGENIC
SBS	Chr6	12899884	C-T	HET	INTERGENIC
SBS	Chr6	15810741	C-A	HOMO	INTERGENIC
SBS	Chr6	28574769	T-A	HET	INTERGENIC
SBS	Chr6	2892028	A-C	HOMO	INTERGENIC
SBS	Chr7	15527973	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g26840
SBS	Chr7	15527974	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g26840
SBS	Chr7	23726717	A-G	HET	INTERGENIC
SBS	Chr7	24233367	A-T	HET	INTERGENIC
SBS	Chr7	26283700	G-A	HET	INTERGENIC
SBS	Chr9	13085598	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	20638453	G-A	HET	INTRON
SBS	Chr9	3643453	A-G	HOMO	INTERGENIC
SBS	Chr9	8355839	A-G	HET	INTERGENIC
SBS	Chr9	8595496	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14530
SBS	Chr9	9715269	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15900

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	194174	194186	12
Deletion	Chr8	467156	467186	30
Deletion	Chr6	1623801	1623811	10
Deletion	Chr10	2089659	2089662	3
Deletion	Chr12	4140902	4140903	1
Deletion	Chr1	6270151	6270170	19
Deletion	Chr7	7187008	7187021	13
Deletion	Chr3	10710998	10710999	1
Deletion	Chr3	10848548	10848549	1
Deletion	Chr10	13981781	13981801	20
Deletion	Chr6	14038562	14038563	1
Deletion	Chr1	14280361	14280371	10
Deletion	Chr6	15337485	15337486	1
Deletion	Chr8	17034909	17034917	8	LOC_Os08g27950
Deletion	Chr9	17554980	17554993	13
Deletion	Chr8	17856001	17866000	9999	3
Deletion	Chr10	18716706	18716711	5
Deletion	Chr6	21466097	21466098	1
Deletion	Chr11	21760683	21760686	3
Deletion	Chr11	22237172	22237189	17
Deletion	Chr7	23156472	23156473	1
Deletion	Chr8	24762759	24762761	2
Deletion	Chr8	25006367	25006368	1
Deletion	Chr7	25355082	25355100	18
Deletion	Chr11	26698918	26698919	1
Deletion	Chr1	26819903	26819915	12

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	9987199	9987199	1
Insertion	Chr6	7423159	7423159	1
Insertion	Chr6	7457203	7457203	1
Insertion	Chr8	6385387	6385387	1
Insertion	Chr9	11555173	11555173	1	LOC_Os09g19310

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	15461752	Chr3	8299083
Translocation	Chr9	15462987	Chr3	8299071
Translocation	Chr9	15536793	Chr4	33688938
Translocation	Chr9	15537146	Chr4	33688938

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