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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12956806	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g23020
SBS	Chr1	2166223	C-T	HET	INTERGENIC
SBS	Chr1	28977159	G-A	HOMO	UTR_3_PRIME
SBS	Chr1	34096425	C-T	HET	INTERGENIC
SBS	Chr1	39782554	A-T	HOMO	INTRON
SBS	Chr10	10276183	C-T	HET	INTRON
SBS	Chr10	5533363	T-C	HET	INTERGENIC
SBS	Chr10	6430721	C-A	HET	INTERGENIC
SBS	Chr11	13331748	A-T	HET	INTERGENIC
SBS	Chr11	23801496	G-A	HET	INTERGENIC
SBS	Chr12	10109022	G-A	HET	INTRON
SBS	Chr12	15748700	A-G	HET	INTERGENIC
SBS	Chr2	3959736	T-A	HOMO	INTERGENIC
SBS	Chr2	6193169	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g11940
SBS	Chr3	10718847	A-G	HET	INTERGENIC
SBS	Chr3	2018606	T-G	HET	INTERGENIC
SBS	Chr4	15478142	G-A	HOMO	INTERGENIC
SBS	Chr4	15692602	C-T	HET	INTERGENIC
SBS	Chr4	23411490	G-A	HOMO	INTERGENIC
SBS	Chr6	13163737	T-C	HOMO	INTRON
SBS	Chr6	24766837	G-C	HET	INTERGENIC
SBS	Chr7	26326654	A-T	HOMO	INTERGENIC
SBS	Chr7	9593510	C-T	HOMO	INTRON
SBS	Chr8	1000603	C-T	HET	INTERGENIC
SBS	Chr9	21275782	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g36890

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1207001	1225000	17999	3
Deletion	Chr10	3192055	3192071	16
Deletion	Chr2	3704501	3704505	4	LOC_Os02g07200
Deletion	Chr7	6216296	6216302	6
Deletion	Chr4	6778453	6778454	1
Deletion	Chr5	6819490	6819492	2
Deletion	Chr1	6998475	6998493	18
Deletion	Chr1	6998513	6998531	18
Deletion	Chr10	7847849	7847850	1
Deletion	Chr12	9194535	9194558	23	LOC_Os12g16100
Deletion	Chr8	9925883	9925954	71
Deletion	Chr10	10975069	10975070	1
Deletion	Chr11	11063990	11063991	1
Deletion	Chr5	11615073	11615074	1
Deletion	Chr5	12141791	12141798	7
Deletion	Chr4	12837813	12837817	4
Deletion	Chr9	17659001	17693000	33999	4
Deletion	Chr1	21012749	21012753	4	LOC_Os01g37580
Deletion	Chr6	21939586	21939593	7
Deletion	Chr6	23706261	23706267	6
Deletion	Chr1	24138882	24138884	2	LOC_Os01g42460
Deletion	Chr1	26045433	26045442	9	LOC_Os01g45860
Deletion	Chr11	26623518	26623520	2	LOC_Os11g44050
Deletion	Chr3	29497237	29497238	1
Deletion	Chr3	31039527	31039528	1
Deletion	Chr2	32109082	32109083	1
Deletion	Chr1	32529246	32529247	1
Deletion	Chr1	33110204	33110205	1
Deletion	Chr3	35059793	35059805	12

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2194218	2194218	1
Insertion	Chr3	12779018	12779027	10	LOC_Os03g22300
Insertion	Chr3	31127909	31127911	3
Insertion	Chr4	3985879	3985879	1
Insertion	Chr5	22608408	22608415	8

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5078095	5971038
Inversion	Chr12	5078108	5533959	LOC_Os12g10440
Inversion	Chr3	15386227	15477295

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8226704	Chr2	11631160
Translocation	Chr12	15182315	Chr8	22037707
Translocation	Chr12	15182316	Chr8	22040097
Translocation	Chr6	23516461	Chr5	5212182
Translocation	Chr3	25223197	Chr1	23675850	LOC_Os01g41810

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