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Mutant Information

Mutant NameFN3257-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3257-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 33
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr1010209160C-THETINTRON
SBSChr1018738456C-THETNON_SYNONYMOUS_CODINGLOC_Os10g35110
SBSChr1018931474G-THETINTERGENIC
SBSChr1018931475C-THETINTERGENIC
SBSChr103635705C-THETNON_SYNONYMOUS_CODINGLOC_Os10g06980
SBSChr1115163362T-CHOMOINTERGENIC
SBSChr1118112960G-THETNON_SYNONYMOUS_CODINGLOC_Os11g31110
SBSChr1126091651A-GHETINTERGENIC
SBSChr1126486945C-THETINTERGENIC
SBSChr117583116G-AHOMOINTERGENIC
SBSChr1211105918G-THOMOINTERGENIC
SBSChr1215455835T-AHOMOINTERGENIC
SBSChr1217601624G-CHOMOINTERGENIC
SBSChr1225136047A-THETNON_SYNONYMOUS_CODINGLOC_Os12g40610
SBSChr1225185069C-THETNON_SYNONYMOUS_CODINGLOC_Os12g40680
SBSChr321111903T-CHOMOINTRON
SBSChr32266467C-THETNON_SYNONYMOUS_CODINGLOC_Os03g04750
SBSChr334650117A-THOMOINTRON
SBSChr39528342G-AHOMOINTERGENIC
SBSChr420884342G-THOMONON_SYNONYMOUS_CODINGLOC_Os04g34490
SBSChr44968701T-AHOMOINTRON
SBSChr513787221G-CHETINTERGENIC
SBSChr519716798T-AHETINTERGENIC
SBSChr610490064A-THETINTERGENIC
SBSChr610569318C-AHETINTERGENIC
SBSChr62849103G-THETNON_SYNONYMOUS_CODINGLOC_Os06g06150
SBSChr717184444T-AHETINTERGENIC
SBSChr74436455G-AHETINTRON
SBSChr817494234G-AHOMONON_SYNONYMOUS_CODINGLOC_Os08g28630
SBSChr83664491A-THETINTERGENIC
SBSChr922167462G-THETINTERGENIC
SBSChr96754687C-GHETINTERGENIC
SBSChr97424734G-AHETINTERGENIC

Deletions: 21
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr5149117314911796
DeletionChr1234070013439000319996
DeletionChr4380369638036982
DeletionChr5668991866899191
DeletionChr3746561474656228
DeletionChr10990519499051951
DeletionChr610948391109483921LOC_Os06g19240
DeletionChr711832717118327181LOC_Os07g20490
DeletionChr121293500112952000169992
DeletionChr514642086146420871
DeletionChr514974906149749159
DeletionChr7158531261585313610LOC_Os07g27280
DeletionChr1219146879191468801
DeletionChr720071193200711941
DeletionChr520259920202599222LOC_Os05g34220
DeletionChr421161593211615963
DeletionChr1235958762359589216LOC_Os01g41690
DeletionChr628714001287140021LOC_Os06g47380
DeletionChr129866892298668942
DeletionChr131813747318137481
DeletionChr13311100133137000259993

Insertions: 7
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr11542076754207726LOC_Os11g10070image
InsertionChr12182545841825466986
InsertionChr12237606712376074272
InsertionChr223649327236493282
InsertionChr3245420624542072
InsertionChr41000107374
InsertionChr9384360938436102

No Inversion

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr99749590Chr518014660
TranslocationChr1215953891Chr91340903
TranslocationChr1219377016Chr711249839
TranslocationChr1123833239Chr413589833