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Mutant Information |
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Mutant Name | FN3257-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3257-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 33
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr10 | 10209160 | C-T | HET | INTRON | |
SBS | Chr10 | 18738456 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g35110 |
SBS | Chr10 | 18931474 | G-T | HET | INTERGENIC | |
SBS | Chr10 | 18931475 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 3635705 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g06980 |
SBS | Chr11 | 15163362 | T-C | HOMO | INTERGENIC | |
SBS | Chr11 | 18112960 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g31110 |
SBS | Chr11 | 26091651 | A-G | HET | INTERGENIC | |
SBS | Chr11 | 26486945 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 7583116 | G-A | HOMO | INTERGENIC | |
SBS | Chr12 | 11105918 | G-T | HOMO | INTERGENIC | |
SBS | Chr12 | 15455835 | T-A | HOMO | INTERGENIC | |
SBS | Chr12 | 17601624 | G-C | HOMO | INTERGENIC | |
SBS | Chr12 | 25136047 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g40610 |
SBS | Chr12 | 25185069 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g40680 |
SBS | Chr3 | 21111903 | T-C | HOMO | INTRON | |
SBS | Chr3 | 2266467 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g04750 |
SBS | Chr3 | 34650117 | A-T | HOMO | INTRON | |
SBS | Chr3 | 9528342 | G-A | HOMO | INTERGENIC | |
SBS | Chr4 | 20884342 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g34490 |
SBS | Chr4 | 4968701 | T-A | HOMO | INTRON | |
SBS | Chr5 | 13787221 | G-C | HET | INTERGENIC | |
SBS | Chr5 | 19716798 | T-A | HET | INTERGENIC | |
SBS | Chr6 | 10490064 | A-T | HET | INTERGENIC | |
SBS | Chr6 | 10569318 | C-A | HET | INTERGENIC | |
SBS | Chr6 | 2849103 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g06150 |
SBS | Chr7 | 17184444 | T-A | HET | INTERGENIC | |
SBS | Chr7 | 4436455 | G-A | HET | INTRON | |
SBS | Chr8 | 17494234 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g28630 |
SBS | Chr8 | 3664491 | A-T | HET | INTERGENIC | |
SBS | Chr9 | 22167462 | G-T | HET | INTERGENIC | |
SBS | Chr9 | 6754687 | C-G | HET | INTERGENIC | |
SBS | Chr9 | 7424734 | G-A | HET | INTERGENIC |
Deletions: 21
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 1491173 | 1491179 | 6 | |
Deletion | Chr12 | 3407001 | 3439000 | 31999 | 6 |
Deletion | Chr4 | 3803696 | 3803698 | 2 | |
Deletion | Chr5 | 6689918 | 6689919 | 1 | |
Deletion | Chr3 | 7465614 | 7465622 | 8 | |
Deletion | Chr10 | 9905194 | 9905195 | 1 | |
Deletion | Chr6 | 10948391 | 10948392 | 1 | LOC_Os06g19240 |
Deletion | Chr7 | 11832717 | 11832718 | 1 | LOC_Os07g20490 |
Deletion | Chr12 | 12935001 | 12952000 | 16999 | 2 |
Deletion | Chr5 | 14642086 | 14642087 | 1 | |
Deletion | Chr5 | 14974906 | 14974915 | 9 | |
Deletion | Chr7 | 15853126 | 15853136 | 10 | LOC_Os07g27280 |
Deletion | Chr12 | 19146879 | 19146880 | 1 | |
Deletion | Chr7 | 20071193 | 20071194 | 1 | |
Deletion | Chr5 | 20259920 | 20259922 | 2 | LOC_Os05g34220 |
Deletion | Chr4 | 21161593 | 21161596 | 3 | |
Deletion | Chr1 | 23595876 | 23595892 | 16 | LOC_Os01g41690 |
Deletion | Chr6 | 28714001 | 28714002 | 1 | LOC_Os06g47380 |
Deletion | Chr1 | 29866892 | 29866894 | 2 | |
Deletion | Chr1 | 31813747 | 31813748 | 1 | |
Deletion | Chr1 | 33111001 | 33137000 | 25999 | 3 |
Insertions: 7
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 5420767 | 5420772 | 6 | LOC_Os11g10070![]() |
Insertion | Chr12 | 18254584 | 18254669 | 86 | |
Insertion | Chr12 | 23760671 | 23760742 | 72 | |
Insertion | Chr2 | 23649327 | 23649328 | 2 | |
Insertion | Chr3 | 2454206 | 2454207 | 2 | |
Insertion | Chr4 | 1000 | 1073 | 74 | |
Insertion | Chr9 | 3843609 | 3843610 | 2 |
No Inversion
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 9749590 | Chr5 | 18014660 | |
Translocation | Chr12 | 15953891 | Chr9 | 1340903 | |
Translocation | Chr12 | 19377016 | Chr7 | 11249839 | |
Translocation | Chr11 | 23833239 | Chr4 | 13589833 |