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Mutant Information

Mutant Name	FN3261-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3261-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20513047	T-A	HET	INTERGENIC
SBS	Chr10	14320512	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	3459983	C-A	HET	INTRON
SBS	Chr11	1072133	C-T	HET	INTRON
SBS	Chr11	13131131	A-G	HET	INTERGENIC
SBS	Chr11	13149372	G-A	HET	STOP_GAINED	LOC_Os11g22860
SBS	Chr11	1393202	A-G	HOMO	INTRON
SBS	Chr11	21758119	G-A	HET	INTRON
SBS	Chr2	17653375	C-T	HET	INTERGENIC
SBS	Chr2	25988779	A-C	HET	INTERGENIC
SBS	Chr4	31585635	T-A	HET	INTERGENIC
SBS	Chr4	33069424	G-A	HET	INTERGENIC
SBS	Chr5	10383170	G-A	HOMO	INTRON
SBS	Chr5	24693868	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	15712154	C-T	HET	INTRON
SBS	Chr6	25424212	C-A	HOMO	INTERGENIC

Deletions: 74

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1119287	1119288	1
Deletion	Chr1	1312010	1312015	5
Deletion	Chr4	2216804	2216805	1
Deletion	Chr4	2542302	2542303	1
Deletion	Chr4	2644020	2644021	1
Deletion	Chr8	2724643	2724644	1
Deletion	Chr9	2782644	2782645	1
Deletion	Chr9	4654509	4654510	1
Deletion	Chr7	4789449	4789462	13	LOC_Os07g09180
Deletion	Chr9	4861332	4861333	1	LOC_Os09g09090
Deletion	Chr8	5036828	5036829	1
Deletion	Chr9	5145805	5145812	7
Deletion	Chr8	5935232	5935233	1
Deletion	Chr4	7294490	7294491	1
Deletion	Chr12	8059766	8059769	3	LOC_Os12g14190
Deletion	Chr9	8288596	8288634	38
Deletion	Chr8	8544846	8544854	8	LOC_Os08g14250
Deletion	Chr12	9228999	9229000	1
Deletion	Chr5	9426915	9426922	7
Deletion	Chr10	9660742	9660746	4
Deletion	Chr9	10136507	10136508	1
Deletion	Chr11	10453859	10453863	4
Deletion	Chr7	11146001	11165000	18999	3
Deletion	Chr2	11161001	11172000	10999	2
Deletion	Chr3	12574046	12574047	1
Deletion	Chr5	13871527	13871528	1
Deletion	Chr1	13967298	13967299	1
Deletion	Chr7	14059437	14059442	5
Deletion	Chr1	14101000	14101002	2
Deletion	Chr8	14131390	14131391	1
Deletion	Chr5	14289905	14289906	1
Deletion	Chr4	14402346	14402347	1
Deletion	Chr5	14776320	14776321	1
Deletion	Chr12	14971539	14971540	1
Deletion	Chr7	15132203	15132212	9
Deletion	Chr8	16565370	16565408	38
Deletion	Chr8	17142123	17142124	1
Deletion	Chr12	17193510	17193513	3
Deletion	Chr3	17493340	17493341	1
Deletion	Chr7	17964354	17964356	2	LOC_Os07g30350
Deletion	Chr11	17987206	17987207	1
Deletion	Chr5	18098251	18098252	1	LOC_Os05g31130
Deletion	Chr7	18301343	18301344	1
Deletion	Chr4	18302967	18302969	2
Deletion	Chr7	18965856	18965860	4
Deletion	Chr11	19416925	19416926	1
Deletion	Chr12	19501230	19501232	2
Deletion	Chr1	19524118	19524121	3
Deletion	Chr1	20128042	20128043	1
Deletion	Chr12	21110106	21110108	2
Deletion	Chr4	21187767	21187768	1
Deletion	Chr6	21244986	21244987	1
Deletion	Chr12	21392748	21392749	1
Deletion	Chr8	21734880	21734883	3	LOC_Os08g34590
Deletion	Chr12	21934875	21934876	1
Deletion	Chr10	22811037	22811038	1
Deletion	Chr7	22878406	22878457	51
Deletion	Chr6	24163428	24163434	6
Deletion	Chr12	24905924	24905925	1
Deletion	Chr6	24927397	24927410	13	LOC_Os06g41620
Deletion	Chr11	25438441	25438444	3
Deletion	Chr6	25514274	25514275	1
Deletion	Chr3	26111523	26111524	1
Deletion	Chr8	26704437	26704439	2
Deletion	Chr11	27012178	27012181	3	LOC_Os11g44670
Deletion	Chr1	27428083	27428084	1
Deletion	Chr5	28059855	28059856	1
Deletion	Chr11	28112598	28112611	13	LOC_Os11g46840
Deletion	Chr5	28410535	28410540	5
Deletion	Chr4	29464001	29483000	18999	3
Deletion	Chr2	29847209	29847280	71
Deletion	Chr2	32207793	32207795	2
Deletion	Chr2	32674196	32674197	1
Deletion	Chr1	36629159	36629160	1

Insertions: 52

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12453004	12453004	1
Insertion	Chr1	26180233	26180233	1
Insertion	Chr1	26935317	26935317	1
Insertion	Chr1	33352658	33352658	1
Insertion	Chr10	13716809	13716813	5
Insertion	Chr10	14002198	14002198	1
Insertion	Chr10	7080943	7080943	1
Insertion	Chr10	9732271	9732272	2
Insertion	Chr11	22105273	22105273	1
Insertion	Chr11	27121482	27121484	3
Insertion	Chr11	3249825	3249826	2
Insertion	Chr11	5536968	5536968	1
Insertion	Chr11	7523454	7523520	67
Insertion	Chr11	9981486	9981486	1
Insertion	Chr12	13902250	13902250	1
Insertion	Chr12	14044188	14044188	1	LOC_Os12g24555
Insertion	Chr12	16030037	16030055	19
Insertion	Chr12	7608984	7608988	5
Insertion	Chr2	25641751	25641751	1
Insertion	Chr2	27574813	27574813	1
Insertion	Chr2	3898317	3898317	1
Insertion	Chr3	17318930	17318930	1
Insertion	Chr3	18172564	18172564	1
Insertion	Chr4	10182469	10182469	1
Insertion	Chr4	20747361	20747361	1
Insertion	Chr4	28446277	28446277	1
Insertion	Chr4	28683409	28683409	1
Insertion	Chr4	30674010	30674022	13
Insertion	Chr5	15397923	15397923	1
Insertion	Chr5	18792768	18792768	1
Insertion	Chr5	25986184	25986184	1
Insertion	Chr5	29854690	29854690	1
Insertion	Chr5	6397335	6397337	3
Insertion	Chr5	9736157	9736160	4
Insertion	Chr6	12549471	12549471	1
Insertion	Chr6	21771964	21771964	1
Insertion	Chr6	5599467	5599470	4
Insertion	Chr7	12478972	12478973	2
Insertion	Chr7	18301570	18301570	1
Insertion	Chr7	26597163	26597163	1
Insertion	Chr7	6431611	6431616	6	LOC_Os07g11640
Insertion	Chr7	9874130	9874130	1	LOC_Os07g16810
Insertion	Chr8	12481418	12481418	1
Insertion	Chr8	16898110	16898157	48
Insertion	Chr8	16899775	16899809	35
Insertion	Chr8	18060585	18060588	4
Insertion	Chr8	21130300	21130300	1
Insertion	Chr8	2543605	2543666	62
Insertion	Chr8	27756945	27756946	2
Insertion	Chr9	22314571	22314571	1
Insertion	Chr9	319609	319610	2
Insertion	Chr9	5576933	5577022	90	LOC_Os09g10240

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2278155	2587895	LOC_Os10g05240
Inversion	Chr10	2761402	2762165
Inversion	Chr4	14274743	15016821
Inversion	Chr5	19881661	20720514
Inversion	Chr4	26673799	27229996
Inversion	Chr4	26673812	27230005
Inversion	Chr1	35717122	35717263

Translocations: 40

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	39242	Chr2	15410998	LOC_Os10g01030
Translocation	Chr11	515394	Chr5	10473700	LOC_Os11g01960
Translocation	Chr9	1100912	Chr2	2674024
Translocation	Chr5	4378592	Chr4	14979657
Translocation	Chr12	4386657	Chr2	15420855	LOC_Os02g26250
Translocation	Chr5	4532186	Chr2	15425664	2
Translocation	Chr8	4572575	Chr3	16530378
Translocation	Chr10	5149235	Chr4	3713484
Translocation	Chr7	5740076	Chr1	10486710
Translocation	Chr9	6282068	Chr4	5870975
Translocation	Chr8	6303539	Chr2	9192302
Translocation	Chr9	7135536	Chr6	11646392
Translocation	Chr7	7408651	Chr1	24045261	LOC_Os07g12900
Translocation	Chr6	8875844	Chr1	42197477
Translocation	Chr9	9371256	Chr6	3931864
Translocation	Chr12	9878189	Chr10	327716
Translocation	Chr6	10395375	Chr2	23043795
Translocation	Chr9	10396951	Chr1	8290542
Translocation	Chr12	12473933	Chr9	5558926
Translocation	Chr6	13548800	Chr4	12174816
Translocation	Chr3	13767081	Chr1	2427141
Translocation	Chr11	15088344	Chr7	14214837
Translocation	Chr5	15265280	Chr1	18684006
Translocation	Chr2	15605457	Chr1	17178521
Translocation	Chr12	16493847	Chr7	13266632
Translocation	Chr7	17141775	Chr6	16283287
Translocation	Chr4	17940263	Chr2	13401459	LOC_Os04g30040
Translocation	Chr11	18032334	Chr4	8324480
Translocation	Chr2	18080008	Chr1	8155805
Translocation	Chr12	19092048	Chr1	24366466
Translocation	Chr6	19275572	Chr5	8800367
Translocation	Chr9	19491444	Chr3	33436914
Translocation	Chr9	19493112	Chr3	33436913
Translocation	Chr8	19719812	Chr2	27242590
Translocation	Chr4	20933104	Chr1	17774756
Translocation	Chr7	22010603	Chr3	8428627
Translocation	Chr11	22522354	Chr4	30603762
Translocation	Chr12	26092304	Chr1	17722027
Translocation	Chr12	26145584	Chr11	17687180
Translocation	Chr11	28680257	Chr8	20028566

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